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OR576728.1__WNM70345.1__X__00001

Bact-Vir

OR576728.1__WNM70345.1__X__00001

Identity

Accession:
OR576728 ↗
Kingdom:
phage

Quality

76.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myxococcus_phage_Mx4_ts27htf-1hrm-1

TaxID: 2994996

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-70
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4izzB02 1.10.10.1680 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain 0.87 54.0 4.76e-01 87.8% 45.6%
4iejA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.75 55.0 4.82e-01 91.8% 52.0%
4u3aB00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.72 39.0 2.34e-01 71.4% 8.2%
1kyoF00 1.10.287.20 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain 0.71 41.0 3.51e-01 89.8% 37.8%
2g7lA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.70 53.0 3.61e-01 100.0% 21.4%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.67 46.0 3.71e-01 83.7% 37.2%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 45.0 4.39e-01 100.0% 66.1%
5jtfB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 54.0 3.72e-01 95.9% 93.7%
4k7jA01 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 45.0 2.92e-01 79.6% 81.4%
6x6uA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.60 50.0 3.30e-01 95.9% 52.8%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 44.0 2.96e-01 79.6% 23.1%
4abxC01 6.10.140.1080 Special › Helix non-globular › Helix Hairpins › 0.58 44.0 3.79e-01 81.6% 66.2%
1cxzB00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.58 43.0 3.56e-01 95.9% 45.3%
2ge3A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 46.0 3.24e-01 91.8% 62.2%
4rw0A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.57 52.0 3.43e-01 100.0% 51.6%
1ysqA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 45.0 3.08e-01 89.8% 36.5%
1lkxC03 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.56 50.0 3.87e-01 100.0% 54.2%
2x5rA01 3.30.470.40 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.56 40.0 3.08e-01 83.7% 32.2%
5u1xA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.56 41.0 4.23e-01 77.6% 97.8%
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.55 48.0 3.43e-01 95.9% 47.1%
3solA00 1.20.58.1630 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS 0.55 42.0 3.54e-01 91.8% 47.3%
1v8bA01 3.40.50.1480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Adenosylhomocysteinase-like 0.52 45.0 2.76e-01 100.0% 75.6%
1xb4B01 1.10.10.570 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › """Winged helix"" DNA-binding domain. Chain C. Domain 1" 0.51 43.0 3.42e-01 95.9% 69.2%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4527734 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.72 64.0 5.82e-01 98.0% 78.5%
3829621 2004.1.1.105 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase 0.69 55.0 3.72e-01 87.8% 26.4%
3485048 7579.1.1.83 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lip_C 0.62 54.0 3.15e-01 98.0% 28.1%
5023516 3922.1.1.269 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Rad50_zn_hook 0.62 46.0 2.97e-01 81.6% 17.4%
3989334 2004.1.1.106 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N 0.62 46.0 3.29e-01 87.8% 24.7%
3229732 6171.1.1.0 ↗ alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases 0.62 46.0 3.59e-01 79.6% 86.0%
5014330 148.1.3.402 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Rad50_zn_hook 0.61 46.0 3.55e-01 81.6% 38.2%
4320634 3755.3.1.0 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 44.0 2.72e-01 79.6% 14.7%
5000807 103.8.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II 0.59 43.0 3.73e-01 77.6% 69.3%
4935696 169.1.1.1 ↗ alpha complex topology › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › Aldehyde ferredoxin oxidoreductase-C › AFOR_C 0.57 48.0 2.86e-01 95.9% 30.0%
4941755 101.18.1.0 ↗ alpha arrays › HTH › DNA-binding domain of TraM protein › DNA-binding domain of TraM protein 0.57 50.0 4.20e-01 100.0% 62.4%
3219672 601.1.2.79 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › TMEM126_like 0.57 47.0 3.16e-01 93.9% 45.6%
4947847 3883.1.1.0 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain 0.57 50.0 3.41e-01 100.0% 85.7%
3601118 103.8.1.0 ↗ alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain 0.56 39.0 3.75e-01 83.7% 61.5%
3608630 103.8.1.1 ↗ alpha arrays › RuvA-C › Hypothetical protein AF0491, middle domain › Hypothetical protein AF0491, middle domain › SBDS_domain_II 0.55 39.0 3.69e-01 83.7% 61.5%
3929112 5054.1.1.17 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TRAM_LAG1_CLN8 0.55 45.0 2.99e-01 93.9% 48.0%
3211131 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 46.0 3.32e-01 95.9% 56.4%
4954685 2004.1.1.49 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase 0.53 46.0 2.65e-01 100.0% 26.4%
3176422 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.51 42.0 2.83e-01 100.0% 84.8%
4179229 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.51 44.0 2.75e-01 98.0% 89.1%
3686290 2484.1.1.4 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H 0.51 43.0 2.88e-01 98.0% 47.6%