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OR576728.1__WNM70352.1__X__00008

Bact-Vir

OR576728.1__WNM70352.1__X__00008

Identity

Accession:
OR576728 ↗
Kingdom:
phage

Quality

81.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Myxococcus_phage_Mx4_ts27htf-1hrm-1

TaxID: 2994996

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-88
PDB
Domain cluster: rep: NC_055841.1__YP_010107172.1__KNU99_gp030__00030__D2-66
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 51.0 5.31e-01 96.5% 91.0%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 52.0 5.03e-01 100.0% 78.7%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 47.0 5.18e-01 87.1% 98.5%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 47.0 5.05e-01 95.3% 95.8%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 38.0 3.51e-01 72.9% 48.1%
1di2A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 46.0 4.98e-01 94.1% 97.1%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 45.0 4.24e-01 97.6% 63.8%
2yt4A03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 43.0 3.99e-01 81.2% 59.6%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 4.46e-01 92.9% 74.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 46.0 4.96e-01 92.9% 100.0%
2l6mA00 3.30.160.400 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 45.0 4.26e-01 81.2% 83.2%
3tqmA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.59 51.0 5.07e-01 95.3% 96.7%
3cxbB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 34.0 3.27e-01 75.3% 46.6%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.59 51.0 4.76e-01 96.5% 83.2%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 38.0 3.35e-01 77.6% 45.2%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 36.0 3.69e-01 75.3% 63.9%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.59 44.0 3.98e-01 84.7% 59.1%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.44e-01 75.3% 87.5%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.21e-01 76.5% 41.8%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 42.0 3.76e-01 78.8% 78.6%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.22e-01 74.1% 40.6%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 44.0 4.29e-01 90.6% 79.4%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.54 46.0 3.65e-01 92.9% 77.3%
1vpbA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.54 43.0 3.21e-01 88.2% 38.2%
2hzgB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 38.0 3.30e-01 75.3% 81.8%
3l1wA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.53 45.0 3.27e-01 94.1% 86.9%
1st8A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 41.0 2.78e-01 83.5% 35.4%
2khxA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 42.0 4.37e-01 94.1% 96.2%
3htxA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 40.0 4.18e-01 88.2% 94.7%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 47.0 4.22e-01 100.0% 78.4%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 37.0 3.95e-01 75.3% 89.3%
2dayA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.52 39.0 3.61e-01 82.4% 88.5%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.30e-01 77.6% 53.4%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 35.0 3.36e-01 70.6% 100.0%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.51 43.0 3.66e-01 95.3% 85.7%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.51 40.0 3.38e-01 88.2% 59.7%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.08e-01 71.8% 93.9%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.50 29.0 3.03e-01 80.0% 60.5%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 44.0 3.91e-01 100.0% 68.3%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3408941 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.66 51.0 5.29e-01 91.8% 87.5%
146717 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 48.0 4.60e-01 98.8% 67.3%
3911301 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.65 45.0 4.58e-01 94.1% 72.9%
3503377 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.64 50.0 4.71e-01 95.3% 68.6%
3481273 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 54.0 5.03e-01 100.0% 74.3%
4040354 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 48.0 5.08e-01 91.8% 92.0%
3510700 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 55.0 5.21e-01 98.8% 82.0%
3887511 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.63 49.0 4.64e-01 95.3% 71.0%
3994413 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.63 46.0 3.86e-01 76.5% 100.0%
3730099 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 47.0 4.98e-01 89.4% 91.9%
4946199 802.1.1.0 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.62 39.0 4.11e-01 78.8% 70.7%
3934686 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 50.0 4.82e-01 97.6% 77.9%
3408974 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 49.0 4.73e-01 95.3% 75.8%
4159609 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.62 56.0 4.50e-01 100.0% 96.9%
3801624 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.62 49.0 4.65e-01 94.1% 73.0%
4567415 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 46.0 4.45e-01 98.8% 70.0%
5810 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 47.0 4.55e-01 94.1% 71.7%
3505249 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.61 48.0 4.74e-01 96.5% 80.0%
3439202 220.1.1.30 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.61 40.0 4.04e-01 77.6% 67.1%
3481288 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 45.0 4.13e-01 80.0% 67.0%
3517888 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.60 49.0 4.86e-01 97.6% 84.4%
3797649 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.60 50.0 4.68e-01 94.1% 73.6%
3771653 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 49.0 4.64e-01 95.3% 75.2%
4040973 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 44.0 4.79e-01 89.4% 100.0%
3285702 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.58 51.0 4.12e-01 97.6% 92.7%
3627576 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 39.0 4.37e-01 70.6% 92.3%
4102441 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.57 49.0 4.01e-01 94.1% 98.7%
4595466 3572.1.1.2 ↗ a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.56 35.0 3.11e-01 95.3% 43.2%
4472716 330.1.1.3 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Dicer_dimer 0.55 47.0 4.13e-01 96.5% 74.6%
3940546 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.55 39.0 3.58e-01 75.3% 72.2%
3887954 10.1.1.72 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CRLF3_C 0.55 41.0 3.28e-01 80.0% 74.7%
1868804 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.55 47.0 3.72e-01 95.3% 77.5%
3593635 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.47e-01 71.8% 55.5%
3573739 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.54 38.0 3.53e-01 75.3% 72.2%
3264469 4.1.1.309 ↗ beta barrels › SH3 › SH3 › SH3 › MRP-S34 0.54 39.0 3.93e-01 76.5% 88.2%
3483566 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 37.0 3.54e-01 72.9% 70.5%
3931161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.76e-01 83.5% 79.1%
3770801 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.53 38.0 3.75e-01 76.5% 91.6%
3796346 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 38.0 3.16e-01 77.6% 44.1%
3539602 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 46.0 4.35e-01 100.0% 88.6%
3591102 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.52 47.0 3.90e-01 100.0% 73.3%
None — 0.52 40.0 2.75e-01 81.2% 45.9%
3930986 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.52 39.0 3.72e-01 82.4% 69.5%
5047980 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.52 41.0 2.91e-01 89.4% 52.6%
None — 0.52 40.0 2.75e-01 81.2% 45.6%
3736088 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 36.0 3.39e-01 72.9% 92.4%
3189324 375.1.1.319 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Saf4_Yju2 0.51 37.0 3.94e-01 75.3% 100.0%
3182395 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.51 39.0 3.72e-01 81.2% 100.0%
3842362 1.1.5.76 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.51 37.0 3.62e-01 76.5% 90.5%
3350383 2003.1.5.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase 0.51 39.0 2.69e-01 81.2% 45.2%
4000212 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 39.0 2.64e-01 83.5% 29.6%
3250605 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.51 45.0 3.96e-01 100.0% 75.2%