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OR576728.1__WNM70415.1__X__00071

Bact-Vir

OR576728.1__WNM70415.1__X__00071

Identity

Accession:
OR576728 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 87-165
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c9bA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 49.0 4.56e-01 91.1% 58.8%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 48.0 4.83e-01 89.9% 75.9%
3umgA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 44.0 4.62e-01 93.7% 85.9%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 41.0 3.34e-01 75.9% 38.0%
3dwbA01 3.40.390.10 Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) 0.57 49.0 3.34e-01 98.7% 72.4%
1j77A00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.56 42.0 3.14e-01 79.7% 83.9%
3vwaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 48.0 4.02e-01 100.0% 84.6%
6gs2C01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 45.0 3.18e-01 89.9% 91.7%
3d7iB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.52 34.0 3.19e-01 100.0% 53.1%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.52 44.0 3.47e-01 98.7% 75.3%
2xguB00 1.10.375.10 Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein 0.51 39.0 3.33e-01 83.5% 51.5%
2o4cA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 43.0 3.73e-01 94.9% 98.4%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3946046 101.1.2.52 alpha arrays › HTH › HTH › winged helix domain › KicB 0.75 47.0 4.90e-01 91.1% 68.0%
3748471 4953.1.1.33 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › PF31020 0.59 50.0 4.32e-01 92.4% 60.0%
3392015 3621.1.1.1 alpha arrays › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Dipeptidyl-peptidase 2 helical domain › Peptidase_S28 0.52 38.0 3.39e-01 79.7% 90.8%
140713 170.2.1.0 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein N-terminal domain › Retrovirus capsid protein N-terminal domain 0.52 39.0 3.27e-01 82.3% 53.1%
3217406 235.1.1.2 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_19 0.51 41.0 2.86e-01 94.9% 95.2%
D2 medium residues 166-255
PDB
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.76 45.0 5.49e-01 73.3% 91.5%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 43.0 4.78e-01 71.1% 74.6%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 45.0 5.53e-01 71.1% 100.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 43.0 5.32e-01 78.9% 100.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.69 64.0 4.76e-01 100.0% 52.3%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.68 38.0 4.87e-01 93.3% 96.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.68 48.0 5.44e-01 83.3% 98.5%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.81e-01 96.7% 90.6%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.64 44.0 4.16e-01 71.1% 58.7%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.87e-01 80.0% 88.1%
3ceyB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 3.97e-01 78.9% 70.9%
2rm4A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 43.0 4.87e-01 72.2% 100.0%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.61 43.0 4.05e-01 73.3% 88.1%
1wjrA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 3.84e-01 76.7% 81.1%
3exmA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.59 41.0 3.21e-01 71.1% 62.6%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 52.0 4.64e-01 100.0% 93.9%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 52.0 4.51e-01 100.0% 85.1%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.30e-01 76.7% 89.2%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 41.0 4.07e-01 76.7% 88.5%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.56 45.0 4.34e-01 88.9% 91.3%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 47.0 3.30e-01 100.0% 94.6%
2qeaB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.31e-01 74.4% 76.3%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 40.0 3.47e-01 80.0% 84.6%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.53 41.0 3.34e-01 84.4% 99.4%
4b3fX02 2.40.30.270 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 42.0 4.14e-01 88.9% 100.0%
3ir3A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 36.0 3.21e-01 72.2% 96.8%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 2.88e-01 74.4% 79.9%
3qooA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 35.0 3.07e-01 70.0% 88.8%
4kh8A01 2.40.128.540 Mainly Beta › Beta Barrel › Lipocalin › Domain of unknown function DUF4822 0.51 38.0 3.14e-01 77.8% 73.5%
2rhiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 45.0 4.21e-01 97.8% 78.6%
1qwdB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 39.0 3.30e-01 86.7% 80.1%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.50 37.0 3.58e-01 80.0% 96.3%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3279614 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.83 72.0 5.83e-01 100.0% 52.9%
4576823 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.73 68.0 5.62e-01 100.0% 64.0%
4881976 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.73 45.0 4.93e-01 77.8% 75.7%
4030940 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.73 68.0 5.56e-01 100.0% 64.5%
3222051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 48.0 5.55e-01 95.6% 95.4%
3456496 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.71 48.0 4.36e-01 77.8% 53.9%
3398093 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.71 45.0 5.45e-01 80.0% 98.3%
5018860 219.1.1.28 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › CHAP 0.70 65.0 5.42e-01 100.0% 64.7%
4278184 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.70 52.0 5.50e-01 81.1% 87.5%
3675511 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.70 48.0 5.05e-01 78.9% 78.8%
3198731 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.67 51.0 4.48e-01 80.0% 86.2%
3313139 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.66 47.0 3.72e-01 73.3% 47.4%
4196537 4.1.1.52 beta barrels › SH3 › SH3 › SH3 › ZapC_C 0.66 47.0 5.14e-01 77.8% 89.3%
4079197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.70e-01 76.7% 75.3%
4335951 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 49.0 5.34e-01 90.0% 95.9%
3588727 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 5.32e-01 75.6% 97.1%
4340758 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 45.0 5.03e-01 72.2% 100.0%
3298989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.47e-01 83.3% 63.6%
3827886 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.63 48.0 5.09e-01 80.0% 96.2%
4283343 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 50.0 5.33e-01 85.6% 98.8%
3833030 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.63 49.0 4.19e-01 81.1% 80.7%
3515696 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.07e-01 78.9% 87.4%
3893808 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.62 47.0 3.18e-01 78.9% 67.5%
3515145 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.62 41.0 4.09e-01 75.6% 64.2%
3967347 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.62 46.0 5.03e-01 78.9% 94.7%
4317035 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 48.0 4.92e-01 100.0% 87.1%
3576128 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.48e-01 100.0% 66.1%
3595169 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.73e-01 70.0% 97.1%
3829754 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.62 49.0 4.80e-01 83.3% 87.4%
3727542 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 41.0 4.12e-01 73.3% 67.8%
3244497 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.62 48.0 4.00e-01 82.2% 72.7%
3214653 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.25e-01 72.2% 98.9%
3480659 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.61 46.0 3.87e-01 80.0% 81.3%
4073433 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.61 48.0 5.08e-01 84.4% 96.2%
3683850 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.61 48.0 4.48e-01 84.4% 84.5%
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.90e-01 76.7% 100.0%
3576438 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 47.0 4.78e-01 100.0% 83.3%
152597 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.60 41.0 3.88e-01 78.9% 57.7%
3224788 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.60 42.0 4.06e-01 76.7% 65.0%
3886032 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.60 43.0 4.15e-01 76.7% 94.3%
565 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.59 43.0 3.84e-01 76.7% 81.1%
4069560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.94e-01 85.6% 98.7%
3385461 219.1.1.18 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.59 52.0 4.48e-01 100.0% 89.7%
4252954 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.59 42.0 4.61e-01 84.4% 97.1%
4162968 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 46.0 4.87e-01 85.6% 97.5%
4476045 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.58 41.0 4.54e-01 84.4% 97.1%
3617006 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 45.0 4.24e-01 84.4% 84.5%
3288278 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.57 42.0 3.67e-01 76.7% 88.9%
3881117 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 46.0 4.44e-01 100.0% 78.0%
3889853 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.57 42.0 3.90e-01 78.9% 86.1%
3765274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 45.0 4.59e-01 100.0% 86.7%
3576219 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.56 42.0 3.59e-01 78.9% 71.7%
3519774 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 4.31e-01 97.8% 73.3%
4517901 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 44.0 4.35e-01 84.4% 90.5%
3547106 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.56 45.0 4.56e-01 100.0% 86.7%
3763814 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.56 42.0 3.66e-01 78.9% 72.6%
3998042 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.56 48.0 4.60e-01 96.7% 97.1%
3890336 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.56 42.0 2.95e-01 78.9% 75.3%
3488888 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.56 41.0 3.76e-01 76.7% 85.2%
3630782 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.55 48.0 4.14e-01 98.9% 84.1%
3933047 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.54 49.0 3.99e-01 97.8% 88.7%
3515143 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.54 37.0 3.39e-01 72.2% 80.8%
4022025 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.54 48.0 4.10e-01 100.0% 77.9%
3597372 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 44.0 3.06e-01 90.0% 92.6%
3397026 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.53 46.0 3.36e-01 97.8% 77.6%
3488886 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.52 39.0 3.35e-01 80.0% 79.3%
5030199 2005.1.1.17 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.51 45.0 3.16e-01 100.0% 46.9%