←Back to structures

OR613466.1__WNT44314.1__SEA_CANDC_104__00104

Bact-Vir

OR613466.1__WNT44314.1__SEA_CANDC_104__00104

Identity

Accession:
OR613466 ↗
Kingdom:
phage

Quality

64.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gillianvirus› Microbacterium_phage_CandC

TaxID: 3078572

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-57
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tvzA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.60 35.0 2.61e-01 73.2% 21.8%
3mwmA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.60 32.0 3.35e-01 71.4% 55.8%
4rayA02 3.30.1490.190 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ferric-uptake regulator, C-terminal dimerisarion domain 0.59 33.0 3.48e-01 71.4% 60.0%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.53 40.0 3.05e-01 80.4% 76.2%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.53 39.0 2.70e-01 76.8% 24.9%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 42.0 2.79e-01 89.3% 22.1%
7r0kA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.50 39.0 2.88e-01 87.5% 71.1%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3549240 5.1.4.253 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, WD40_Gbeta 0.82 43.0 2.51e-01 76.8% 7.3%
3929962 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.79 66.0 4.21e-01 91.1% 27.1%
3658365 3543.1.1.4 ↗ alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 0.67 51.0 3.17e-01 80.4% 18.2%
5073392 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.67 50.0 4.10e-01 82.1% 46.3%
3723305 3755.3.1.322 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › LUC7 0.66 53.0 3.81e-01 87.5% 40.6%
3180843 109.4.1.192 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.64 47.0 3.15e-01 78.6% 22.1%
3410018 603.1.1.104 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_7 0.61 56.0 3.33e-01 100.0% 42.7%
3521727 233.1.1.1 ↗ a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I 0.59 49.0 3.43e-01 92.9% 58.4%
1204325 2004.1.1.195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C 0.56 46.0 2.73e-01 89.3% 13.1%
5031515 101.1.2.927 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.56 40.0 3.35e-01 75.0% 44.2%
3828070 252.1.1.0 ↗ a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.53 35.0 3.53e-01 75.0% 69.1%
3307718 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.53 41.0 3.20e-01 83.9% 49.2%
3733718 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.52 39.0 3.42e-01 85.7% 54.1%