←Back to structures

OR613473.1__WNT44993.1__SEA_ABBYDAISY_57__00057

Bact-Vir

OR613473.1__WNT44993.1__SEA_ABBYDAISY_57__00057

Identity

Accession:
OR613473 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Arthrobacter_phage_AbbyDaisy

TaxID: 3035367

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-91
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.73 42.0 4.52e-01 98.7% 68.3%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 40.0 2.57e-01 72.0% 13.0%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.65 42.0 4.93e-01 70.7% 98.0%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.58 37.0 3.72e-01 98.7% 64.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 39.0 3.03e-01 70.7% 47.9%
3to8A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.57 38.0 3.49e-01 70.7% 74.8%
2jqzA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 39.0 3.31e-01 73.3% 95.4%
4avrA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.55 44.0 4.11e-01 88.0% 91.5%
2aw4Z00 4.10.830.30 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › Ribosomal protein L31 0.55 38.0 3.91e-01 73.3% 92.9%
4lizA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 34.0 2.85e-01 100.0% 34.1%
1ktbA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 37.0 3.46e-01 88.0% 58.2%
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 3.23e-01 70.7% 82.4%
3weeB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 40.0 3.10e-01 100.0% 35.7%
5e55B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 34.0 3.23e-01 73.3% 52.7%
1auvA01 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 32.0 3.43e-01 72.0% 73.3%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 33.0 2.85e-01 100.0% 35.3%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.45e-01 88.0% 56.6%
2lxxA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 35.0 2.83e-01 100.0% 34.9%
6tfjA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 36.0 3.21e-01 74.7% 66.1%
1b04A02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.51 33.0 3.09e-01 72.0% 50.5%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.51 35.0 3.31e-01 97.3% 58.5%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.50 40.0 3.65e-01 89.3% 67.0%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990345 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 50.0 5.84e-01 74.7% 100.0%
4931448 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 46.0 5.46e-01 92.0% 96.0%
5026836 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.67 39.0 4.08e-01 72.0% 62.9%
4421975 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.65 40.0 4.49e-01 77.3% 83.6%
3340123 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.65 43.0 4.13e-01 100.0% 57.8%
4982792 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.64 43.0 3.38e-01 70.7% 32.5%
3214809 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.63 36.0 3.86e-01 90.7% 66.7%
2870324 4012.3.1.1 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 › Cas9_PI 0.62 44.0 4.80e-01 76.0% 100.0%
3217163 304.9.1.23 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_5 0.59 42.0 3.58e-01 76.0% 66.4%
4314014 4232.1.1.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.58 44.0 4.40e-01 84.0% 90.0%
4114709 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.57 43.0 4.36e-01 82.7% 97.3%
4886440 4232.1.2.1 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Mitoribosomal protein bL28m › Ribosomal_L28 0.57 43.0 4.43e-01 82.7% 100.0%
3628119 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.56 40.0 3.98e-01 74.7% 73.8%
4119116 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.56 43.0 4.37e-01 84.0% 96.0%
5027350 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.56 50.0 4.09e-01 100.0% 53.6%
5033892 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.03e-01 72.0% 81.5%
5034902 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.56 49.0 3.93e-01 100.0% 50.3%
3400735 379.1.1.3 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.55 36.0 4.01e-01 86.7% 90.9%
4206364 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.55 38.0 3.56e-01 98.7% 56.0%
3934671 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 38.0 3.72e-01 74.7% 69.4%
4979507 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.54 48.0 3.87e-01 100.0% 51.0%
5081207 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 39.0 3.81e-01 88.0% 68.2%
3492427 384.1.1.1 ↗ few secondary structure elements › BPTI-like › BPTI-like › BPTI-like › Kunitz_BPTI 0.53 36.0 3.68e-01 90.7% 72.0%
3819971 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.53 40.0 3.12e-01 82.7% 44.7%
3294223 304.9.1.47 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › DUF4283 0.52 37.0 3.85e-01 90.7% 81.4%
3250122 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 40.0 3.75e-01 97.3% 65.0%
3261993 11.1.1.843 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.52 35.0 3.16e-01 72.0% 85.2%
3939093 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.51 36.0 3.66e-01 74.7% 74.7%
5069740 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.51 38.0 3.68e-01 88.0% 70.6%
3504586 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.50 43.0 3.41e-01 100.0% 46.5%
3248299 2498.1.1.14 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M8 0.50 43.0 2.66e-01 100.0% 38.8%