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OR613475.1__WNT45153.1__SEA_OLGASCLOVER_79__00079

Bact-Vir

OR613475.1__WNT45153.1__SEA_OLGASCLOVER_79__00079

Identity

Accession:
OR613475 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Kenoshavirus› Gordonia_phage_OlgasClover

TaxID: 3035386

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-51
PDB
Domain cluster: rep: OQ417965.1__WJJ55749.1__PROPHIT463_44__00044__D8-54
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.75 66.0 5.35e-01 100.0% 53.3%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 59.0 5.51e-01 100.0% 74.6%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.70 61.0 4.54e-01 100.0% 40.0%
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.99e-01 100.0% 98.1%
2d9xA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 60.0 4.69e-01 100.0% 69.1%
1okeB02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.69 61.0 5.27e-01 100.0% 63.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 60.0 5.20e-01 100.0% 73.1%
4kbmB01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 57.0 5.57e-01 100.0% 92.7%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 52.0 5.34e-01 98.0% 91.3%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 54.0 5.36e-01 100.0% 90.4%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.67 57.0 4.25e-01 100.0% 38.2%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 58.0 5.48e-01 100.0% 84.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 54.0 4.51e-01 100.0% 51.0%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 55.0 4.90e-01 100.0% 74.7%
2wfbA00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.66 51.0 3.89e-01 87.8% 74.2%
1gyvA00 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.65 56.0 4.30e-01 100.0% 95.0%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 55.0 5.24e-01 100.0% 96.6%
2ytyA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 50.0 4.22e-01 87.8% 78.4%
3k2yA00 3.30.70.2330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 52.0 4.17e-01 91.8% 92.2%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.64 54.0 5.35e-01 100.0% 90.4%
3lmlA03 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.64 53.0 4.48e-01 93.9% 88.2%
3hxlA02 2.60.40.4290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 53.0 4.38e-01 95.9% 78.9%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.07e-01 100.0% 82.3%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 52.0 5.08e-01 100.0% 88.9%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.32e-01 100.0% 61.6%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.62 46.0 4.69e-01 87.8% 91.3%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.61 43.0 2.95e-01 75.5% 66.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 49.0 5.00e-01 91.8% 100.0%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 50.0 4.46e-01 100.0% 72.2%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 51.0 4.85e-01 100.0% 96.7%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.60 45.0 3.51e-01 85.7% 43.2%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 45.0 4.56e-01 87.8% 89.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 4.36e-01 100.0% 70.3%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 40.0 3.38e-01 79.6% 38.9%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 3.76e-01 83.7% 46.7%
2cofA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 43.0 3.53e-01 83.7% 61.7%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.59 48.0 4.00e-01 100.0% 81.0%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 48.0 4.46e-01 95.9% 73.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.58 47.0 4.39e-01 98.0% 77.3%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.57 45.0 3.91e-01 91.8% 74.4%
6p2lA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 47.0 2.84e-01 98.0% 22.6%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.56 42.0 3.34e-01 87.8% 65.8%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.55 44.0 4.28e-01 95.9% 100.0%
3lzwA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 44.0 3.50e-01 100.0% 97.5%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.53 43.0 4.36e-01 100.0% 100.0%
2hezA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.53 43.0 2.69e-01 95.9% 94.6%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 43.0 3.70e-01 98.0% 76.7%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 38.0 3.71e-01 83.7% 94.6%
1s1dA00 2.120.10.100 Mainly Beta › 6 Propeller › Neuraminidase › Apyrase 0.51 42.0 2.68e-01 100.0% 36.9%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.50 39.0 2.86e-01 100.0% 76.9%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.88 76.0 7.30e-01 100.0% 83.6%
4946165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 64.0 6.26e-01 100.0% 81.8%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 64.0 6.08e-01 100.0% 76.7%
3749245 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.77 67.0 4.95e-01 100.0% 45.4%
3747392 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.77 63.0 5.82e-01 93.9% 80.0%
5046498 219.1.1.51 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.76 68.0 4.66e-01 100.0% 36.4%
3507003 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 67.0 5.84e-01 100.0% 88.0%
5017214 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 61.0 5.97e-01 100.0% 81.8%
4478971 4.1.1.174 ↗ beta barrels › SH3 › SH3 › SH3 › DUF951 0.75 66.0 6.07e-01 100.0% 78.5%
4420340 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 66.0 6.19e-01 100.0% 83.3%
4061621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 4.32e-01 100.0% 25.6%
4110610 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 63.0 4.22e-01 98.0% 26.5%
4405252 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.72 62.0 4.51e-01 100.0% 35.7%
3875218 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.71 59.0 5.45e-01 100.0% 72.3%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 5.81e-01 100.0% 89.1%
2126408 4.1.1.34 ↗ beta barrels › SH3 › SH3 › SH3 › MBT 0.70 61.0 5.20e-01 100.0% 64.2%
4547801 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 60.0 4.97e-01 100.0% 57.8%
3474715 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 57.0 5.28e-01 100.0% 70.8%
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 56.0 5.57e-01 100.0% 88.0%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 55.0 5.39e-01 100.0% 80.0%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.69 55.0 5.37e-01 100.0% 80.0%
3261235 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 58.0 4.96e-01 100.0% 60.0%
5025079 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.33e-01 100.0% 83.6%
3914746 4.1.1.128 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.69 58.0 5.18e-01 100.0% 67.1%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 57.0 5.09e-01 100.0% 65.3%
4432330 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 54.0 5.46e-01 100.0% 88.0%
3570399 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.26e-01 100.0% 76.9%
3795121 4.1.1.110 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.68 57.0 5.23e-01 100.0% 72.3%
3302496 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 53.0 4.25e-01 89.8% 87.6%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.68 55.0 5.31e-01 100.0% 80.0%
4015071 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 56.0 5.12e-01 100.0% 70.0%
3622846 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 55.0 5.55e-01 100.0% 92.0%
4053957 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 53.0 5.31e-01 100.0% 88.0%
4058919 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 53.0 5.32e-01 100.0% 88.0%
185622 219.1.1.18 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 0.67 57.0 4.21e-01 100.0% 36.8%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 53.0 4.69e-01 100.0% 58.7%
3218198 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.33e-01 100.0% 83.6%
3616243 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 56.0 5.42e-01 100.0% 85.5%
3267329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 55.0 4.22e-01 100.0% 39.2%
3196835 2.1.1.82 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rrp44_CSD1 0.65 51.0 3.92e-01 89.8% 87.5%
None — 0.65 54.0 2.99e-01 100.0% 5.9%
3499456 5.1.7.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 10-bladed › Sortilin-Vps10 0.65 55.0 3.14e-01 95.9% 13.7%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.77e-01 100.0% 65.7%
3525406 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 57.0 4.40e-01 100.0% 45.5%
4420173 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.65 57.0 4.95e-01 100.0% 66.7%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 52.0 4.87e-01 100.0% 72.3%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.64 52.0 4.77e-01 100.0% 69.2%
3617355 4.1.1.348 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor, SMN_YG-box 0.64 56.0 4.54e-01 100.0% 52.6%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 52.0 5.02e-01 100.0% 79.3%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 55.0 4.97e-01 100.0% 71.4%
3881119 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 54.0 4.67e-01 100.0% 60.0%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 54.0 5.21e-01 100.0% 85.5%
3579591 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.64 55.0 5.38e-01 100.0% 90.9%
3626927 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.64 50.0 4.86e-01 93.9% 80.0%
3970039 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.64 51.0 3.90e-01 100.0% 37.9%
3482868 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.64 54.0 5.23e-01 98.0% 100.0%
4075769 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.64 52.0 5.11e-01 100.0% 85.5%
3820065 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 5.24e-01 100.0% 87.3%
3611344 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.63 49.0 3.89e-01 89.8% 65.5%
3922679 4.1.1.154 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4772 0.63 52.0 5.22e-01 95.9% 92.0%
3910433 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 54.0 4.98e-01 100.0% 76.9%
4002958 389.1.1.0 ↗ few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.63 49.0 4.95e-01 89.8% 94.0%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.23e-01 100.0% 52.9%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 51.0 4.33e-01 100.0% 58.9%
3943751 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.65e-01 100.0% 81.5%
4890270 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.61 47.0 4.63e-01 100.0% 83.3%
4026957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.89e-01 100.0% 85.0%
3576228 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.60 52.0 4.25e-01 100.0% 55.4%
4098704 4167.1.1.1 ↗ beta complex topology › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › Flagellar hook protein flgE D1 domain › LlgE_F_G_D1 0.60 45.0 3.37e-01 87.8% 48.3%
4187800 4.1.1.39 ↗ beta barrels › SH3 › SH3 › SH3 › SHD1 0.59 45.0 4.36e-01 98.0% 75.0%
4369733 375.1.1.145 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › FdhE_C 0.58 42.0 3.67e-01 75.5% 56.0%
3589569 243.3.1.13 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF5590 0.55 40.0 3.87e-01 83.7% 98.3%
3606532 2484.6.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR 0.54 39.0 3.35e-01 81.6% 56.7%
5032252 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 39.0 3.96e-01 81.6% 88.0%
4998620 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.53 42.0 2.75e-01 100.0% 54.4%