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OR613478.1__WNT45276.1__SEA_BABYDOTZ_21__00021
Bact-VirOR613478.1__WNT45276.1__SEA_BABYDOTZ_21__00021
Identity
- Accession:
- OR613478 ↗
- Kingdom:
- phage
Quality
74.9
mean pLDDT
Taxonomy
TaxID: 2926085
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-183_329-386
Domain cluster:
rep: KC821618.1__AGO48403.1__Phi10-1_gp062__00062__D33-74_121-234_364-393
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3kdrA02 | 3.40.140.120 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › | 0.68 | 37.0 | 4.93e-01 | 76.5% | 96.1% |
| 1b3qB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.62 | 13.0 | 2.48e-01 | 77.0% | 55.9% |
| 1vw4X00 | 2.20.28.120 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Ribosomal protein L33 | 0.59 | 17.0 | 3.02e-01 | 81.0% | 79.7% |
| 3qvnA02 | 3.55.40.20 | Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain | 0.58 | 31.0 | 4.24e-01 | 92.0% | 100.0% |
| 2n99A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.56 | 21.0 | 3.53e-01 | 71.2% | 100.0% |
| 5d6hA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 24.0 | 3.16e-01 | 100.0% | 76.2% |
| 5eokA02 | 3.50.4.10 | Alpha Beta › 3-Layer(bba) Sandwich › Hepatocyte Growth Factor › Hepatocyte Growth Factor | 0.51 | 22.0 | 3.41e-01 | 98.7% | 98.9% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.50 | 22.0 | 2.98e-01 | 81.4% | 77.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3385712 | 228.1.1.1 ↗ | a+b three layers › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Fe,Mn superoxide dismutase (SOD)-C › Sod_Fe_C | 0.61 | 33.0 | 4.16e-01 | 91.6% | 85.9% |
| 146202 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.61 | 17.0 | 3.50e-01 | 72.1% | 100.0% |
| 4676609 | 4038.1.1.10 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Portal_Mu | 0.57 | 51.0 | 4.50e-01 | 92.0% | 83.3% |
| 3964357 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.56 | 51.0 | 4.65e-01 | 94.7% | 89.3% |
| 3943006 | 4038.1.1.1 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal | 0.56 | 48.0 | 4.33e-01 | 88.5% | 84.1% |
| 4437052 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.52 | 28.0 | 3.35e-01 | 92.9% | 76.0% |
| 2006900 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.51 | 21.0 | 3.07e-01 | 81.0% | 81.7% |
| 3995060 | 11.1.4.67 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PKC_C2 | 0.51 | 19.0 | 2.90e-01 | 98.7% | 78.9% |
| 4176001 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.51 | 26.0 | 3.03e-01 | 74.3% | 65.4% |
| 3573883 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.50 | 26.0 | 3.32e-01 | 81.4% | 84.8% |
D2
high
residues 497-604
Domain cluster:
rep: MT771343.1__QOC56015.1__SEA_CLOWN_17__00017__D5-109
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ew2A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.68 | 49.0 | 4.58e-01 | 84.3% | 60.4% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.65 | 36.0 | 3.60e-01 | 93.5% | 54.1% |
| 3go9A02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.63 | 50.0 | 4.02e-01 | 86.1% | 73.3% |
| 3sqiA01 | 1.10.150.540 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.63 | 38.0 | 4.02e-01 | 80.6% | 65.7% |
| 2zy9A03 | 1.10.357.20 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › SLC41 divalent cation transporters, integral membrane domain | 0.63 | 57.0 | 4.84e-01 | 100.0% | 78.2% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.61 | 36.0 | 3.98e-01 | 82.4% | 73.3% |
| 2of7A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 52.0 | 4.83e-01 | 96.3% | 82.1% |
| 4v1gA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.60 | 36.0 | 3.98e-01 | 100.0% | 75.3% |
| 6ofsA02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.59 | 48.0 | 3.82e-01 | 88.0% | 74.0% |
| 1gcvB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 45.0 | 4.22e-01 | 84.3% | 95.6% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 45.0 | 4.19e-01 | 84.3% | 95.0% |
| 6wk3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.58 | 44.0 | 4.02e-01 | 81.5% | 83.4% |
| 3htaC00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 48.0 | 4.03e-01 | 98.1% | 52.4% |
| 4zqeA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.57 | 39.0 | 4.14e-01 | 78.7% | 79.2% |
| 1cg5B00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.56 | 44.0 | 4.07e-01 | 84.3% | 95.7% |
| 1ki1B01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.54 | 45.0 | 3.69e-01 | 89.8% | 72.4% |
| 1jvmB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 41.0 | 4.31e-01 | 95.4% | 88.0% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.54 | 42.0 | 4.22e-01 | 83.3% | 91.0% |
| 8ek4A01 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.53 | 42.0 | 3.91e-01 | 82.4% | 85.7% |
| 2hyjA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.53 | 45.0 | 4.13e-01 | 94.4% | 78.2% |
| 2eggB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.53 | 35.0 | 3.12e-01 | 77.8% | 47.3% |
| 2i0mA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.53 | 40.0 | 4.04e-01 | 78.7% | 82.1% |
| 3mvpA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.52 | 46.0 | 4.19e-01 | 100.0% | 73.2% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.52 | 36.0 | 3.10e-01 | 100.0% | 47.8% |
| 4iloA00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 47.0 | 3.58e-01 | 98.1% | 98.3% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.51 | 35.0 | 3.61e-01 | 98.1% | 73.3% |
| 4gyvE00 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.51 | 43.0 | 3.43e-01 | 90.7% | 69.3% |
| 3n3wA00 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.51 | 41.0 | 3.74e-01 | 85.2% | 82.6% |
| 3pfdA01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.51 | 39.0 | 3.88e-01 | 91.7% | 79.5% |
| 1nf1A02 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.50 | 43.0 | 3.68e-01 | 94.4% | 61.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4286256 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.65 | 36.0 | 3.38e-01 | 99.1% | 45.4% |
| 3585117 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.65 | 59.0 | 4.44e-01 | 100.0% | 70.6% |
| 4662973 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.63 | 39.0 | 4.65e-01 | 100.0% | 95.7% |
| 5065463 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.62 | 56.0 | 4.60e-01 | 100.0% | 86.4% |
| 5003920 | 5079.1.1.1 ↗ | alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE | 0.61 | 54.0 | 4.63e-01 | 100.0% | 82.2% |
| 3999629 | 1075.1.1.4 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane_3 | 0.61 | 53.0 | 3.95e-01 | 97.2% | 75.7% |
| 4932281 | 606.1.1.0 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain | 0.58 | 42.0 | 4.49e-01 | 93.5% | 86.3% |
| 3291430 | 106.1.1.11 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N | 0.58 | 44.0 | 4.11e-01 | 82.4% | 95.7% |
| 3835373 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.57 | 37.0 | 3.33e-01 | 75.9% | 47.3% |
| 3588587 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.56 | 49.0 | 4.82e-01 | 95.4% | 92.2% |
| 3280795 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.56 | 50.0 | 4.59e-01 | 100.0% | 76.4% |
| 3946757 | 601.19.1.3 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F | 0.54 | 46.0 | 3.65e-01 | 94.4% | 64.0% |
| 3311288 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 42.0 | 3.67e-01 | 84.3% | 64.4% |
| 3279903 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 46.0 | 4.46e-01 | 100.0% | 92.8% |
| 5051406 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 42.0 | 3.42e-01 | 85.2% | 76.4% |
| 56928 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.52 | 46.0 | 4.58e-01 | 100.0% | 98.3% |
| 3297061 | 632.1.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain | 0.51 | 35.0 | 3.44e-01 | 100.0% | 66.1% |
| 4167114 | 131.2.1.0 ↗ | alpha complex topology › PDEase-like › Poly A polymerase C-terminal region-like › Poly A polymerase C-terminal region-like | 0.51 | 38.0 | 2.81e-01 | 82.4% | 70.1% |
| 3740294 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.51 | 42.0 | 3.70e-01 | 100.0% | 62.7% |
| 4023025 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.50 | 43.0 | 3.86e-01 | 92.6% | 92.0% |
| 3986989 | 5054.1.1.68 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › AI-2E_transport | 0.50 | 44.0 | 3.85e-01 | 100.0% | 79.4% |
| 3740106 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 35.0 | 3.50e-01 | 75.9% | 68.7% |