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OR613478.1__WNT45342.1__SEA_BABYDOTZ_89__00089

Bact-Vir

OR613478.1__WNT45342.1__SEA_BABYDOTZ_89__00089

Identity

Accession:
OR613478 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 37-89
PDB
Domain cluster: representative
CATH (84)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4p2iA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.77 68.0 5.24e-01 100.0% 82.9%
2o3oA01 2.40.128.690 Mainly Beta › Beta Barrel › Lipocalin › YycH protein, domain 3-like 0.76 62.0 4.76e-01 90.6% 42.1%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.73 61.0 4.69e-01 100.0% 40.8%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.72 50.0 4.87e-01 86.8% 65.0%
3atsA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 59.0 4.49e-01 92.5% 80.2%
1s67L00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.69 52.0 3.99e-01 83.0% 36.1%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 55.0 4.48e-01 100.0% 46.2%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.69 61.0 4.28e-01 100.0% 67.7%
2vqeE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 60.0 5.69e-01 100.0% 84.4%
3fhwA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 58.0 4.82e-01 100.0% 88.9%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 54.0 4.36e-01 88.7% 70.2%
4gn2A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.67 57.0 3.78e-01 100.0% 25.4%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.67 57.0 4.39e-01 100.0% 51.2%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.67 52.0 4.03e-01 94.3% 68.1%
4hh2C04 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 47.0 3.70e-01 79.2% 35.0%
4ph8A00 2.60.40.2910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 53.0 3.83e-01 88.7% 69.3%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.66 55.0 4.46e-01 98.1% 55.6%
4mb4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.65 46.0 4.06e-01 86.8% 50.6%
3en2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 54.0 4.64e-01 98.1% 68.1%
3upuA03 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.65 56.0 4.27e-01 100.0% 72.5%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 58.0 4.17e-01 100.0% 48.6%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.64 47.0 3.49e-01 81.1% 30.4%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.64 54.0 3.92e-01 98.1% 66.2%
7jrmA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 47.0 4.21e-01 88.7% 56.8%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.64 56.0 3.85e-01 100.0% 63.3%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 45.0 3.59e-01 79.2% 37.4%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.63 49.0 3.94e-01 88.7% 62.8%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 47.0 3.72e-01 84.9% 37.3%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.63 53.0 4.18e-01 100.0% 85.2%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.63 48.0 3.33e-01 86.8% 86.3%
4f3lA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 46.0 3.64e-01 83.0% 36.9%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 52.0 3.96e-01 96.2% 93.1%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 55.0 3.86e-01 100.0% 47.9%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.62 44.0 4.70e-01 86.8% 100.0%
4nzjA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 51.0 4.21e-01 88.7% 58.2%
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.62 52.0 3.10e-01 98.1% 35.6%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 47.0 3.37e-01 88.7% 63.9%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 3.92e-01 94.3% 82.4%
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.61 43.0 3.64e-01 77.4% 72.4%
4k7rA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.61 48.0 4.29e-01 88.7% 59.7%
2wllA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.61 50.0 3.79e-01 98.1% 69.7%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 50.0 3.63e-01 90.6% 68.0%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.61 50.0 3.37e-01 90.6% 24.1%
3bwlB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.60 44.0 3.47e-01 86.8% 35.0%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 47.0 3.93e-01 96.2% 60.0%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.60 52.0 3.54e-01 98.1% 66.5%
1n7vA02 2.60.330.10 Mainly Beta › Sandwich › receptor-binding protein prd1-p2, domain 2 › receptor-binding protein prd1-p2, domain 2 0.60 50.0 3.92e-01 98.1% 67.5%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.60 46.0 3.05e-01 90.6% 29.6%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.60 40.0 4.13e-01 86.8% 79.2%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.60 50.0 3.87e-01 100.0% 78.9%
1a8rA02 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.59 50.0 3.81e-01 98.1% 88.2%
3f7sA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 3.67e-01 96.2% 38.7%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 49.0 3.78e-01 96.2% 49.6%
1ni9A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 45.0 3.35e-01 88.7% 31.1%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.58 47.0 3.46e-01 90.6% 36.4%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 45.0 3.47e-01 86.8% 35.6%
2k5vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.11e-01 100.0% 69.4%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.58 49.0 3.94e-01 100.0% 93.9%
4r6uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 44.0 3.80e-01 84.9% 56.8%
2hngA00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.58 47.0 3.69e-01 96.2% 75.2%
5dstA02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.57 45.0 3.29e-01 94.3% 88.7%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 50.0 3.21e-01 100.0% 40.4%
4gafB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 45.0 3.62e-01 88.7% 64.2%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.57 47.0 3.75e-01 98.1% 95.8%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 3.61e-01 96.2% 44.5%
4f3lA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 43.0 3.43e-01 86.8% 45.8%
4ghbA00 2.40.160.190 Mainly Beta › Beta Barrel › Porin › 0.57 49.0 3.11e-01 96.2% 28.2%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.58e-01 84.9% 82.5%
3e1eC00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 42.0 3.25e-01 86.8% 68.1%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 3.79e-01 92.5% 61.1%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.55 45.0 3.04e-01 90.6% 89.2%
1pfsA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 4.06e-01 98.1% 94.9%
6fgjA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 43.0 3.24e-01 90.6% 88.7%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 3.48e-01 96.2% 49.2%
3fn9C04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 47.0 3.95e-01 98.1% 70.7%
1wgoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 43.0 3.56e-01 88.7% 57.6%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.54 41.0 4.09e-01 81.1% 93.0%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 43.0 3.33e-01 96.2% 44.7%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.54 42.0 3.18e-01 88.7% 64.7%
2ejwA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.54 45.0 3.39e-01 100.0% 89.9%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 46.0 3.69e-01 98.1% 68.8%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.53 38.0 2.89e-01 83.0% 52.1%
2hv2A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 37.0 3.18e-01 77.4% 43.2%
2ltjA00 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.51 38.0 3.15e-01 86.8% 58.6%
ECOD (94)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3927710 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.82 73.0 5.08e-01 100.0% 71.5%
3863194 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.79 70.0 5.25e-01 100.0% 86.2%
3173646 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.77 70.0 4.85e-01 100.0% 64.8%
3693249 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.76 67.0 5.00e-01 100.0% 89.2%
3396462 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.76 66.0 6.17e-01 98.1% 89.2%
3483729 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.75 67.0 5.13e-01 100.0% 91.7%
3282536 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.74 64.0 5.65e-01 100.0% 78.8%
3184285 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.74 57.0 3.82e-01 88.7% 22.0%
5017212 11.1.1.1443 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 0.72 59.0 4.51e-01 88.7% 44.3%
4957500 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.72 56.0 4.55e-01 86.8% 46.3%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.71 61.0 4.62e-01 96.2% 88.8%
2494924 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.71 60.0 5.39e-01 98.1% 70.5%
3352475 330.3.1.0 a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.70 59.0 5.35e-01 96.2% 80.0%
3962486 243.1.1.77 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF29518 0.70 60.0 4.19e-01 92.5% 40.9%
4996829 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.69 53.0 3.14e-01 84.9% 10.6%
3372143 881.1.1.1 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.69 58.0 4.33e-01 90.6% 53.6%
4169235 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.69 58.0 4.39e-01 100.0% 39.8%
3788285 395.1.1.4 few secondary structure elements › Midkine-related › Midkine-related › Midkine-related › Flocculin_t3 0.69 52.0 5.31e-01 84.9% 100.0%
4528481 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.69 61.0 4.94e-01 100.0% 63.0%
5056883 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.69 58.0 4.65e-01 100.0% 99.1%
4977196 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.69 51.0 3.32e-01 88.7% 16.9%
5036880 330.1.1.35 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.69 60.0 5.43e-01 100.0% 72.9%
3619212 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.68 53.0 3.29e-01 90.6% 14.8%
5023738 11.1.1.1443 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF29994 0.68 55.0 4.28e-01 88.7% 44.5%
4965259 218.1.1.5 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MenC_N 0.68 59.0 4.85e-01 100.0% 64.0%
4984593 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.67 52.0 3.86e-01 84.9% 91.1%
4958862 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.67 48.0 3.76e-01 81.1% 35.7%
3591184 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 53.0 3.15e-01 88.7% 22.6%
3197288 74.1.1.0 beta duplicates or obligate multimers › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain › Transcription factor IIA (TFIIA), beta-barrel domain 0.67 52.0 5.37e-01 88.7% 94.0%
4336488 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 58.0 5.33e-01 100.0% 74.3%
3986369 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.66 58.0 4.48e-01 100.0% 51.7%
4873579 4019.1.1.3 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.66 56.0 5.02e-01 100.0% 76.9%
5047585 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.66 48.0 3.68e-01 81.1% 34.2%
5074003 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.66 57.0 4.50e-01 100.0% 63.5%
4297163 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.66 56.0 4.57e-01 100.0% 58.1%
4131098 218.1.1.0 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like 0.66 57.0 4.67e-01 100.0% 62.0%
3824181 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.66 50.0 4.87e-01 84.9% 85.0%
3383391 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 55.0 4.66e-01 94.3% 88.6%
5073338 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.65 56.0 4.41e-01 100.0% 63.5%
5071966 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.65 56.0 4.42e-01 100.0% 65.2%
4973410 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.64 54.0 3.94e-01 100.0% 41.2%
3784232 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.64 57.0 4.13e-01 100.0% 64.8%
3603591 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 53.0 3.28e-01 98.1% 24.4%
5052132 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.64 54.0 4.30e-01 98.1% 65.5%
167858 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.63 53.0 4.16e-01 100.0% 83.2%
4940900 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 49.0 3.93e-01 86.8% 69.5%
3264470 5090.1.1.7 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › HAP2-GCS1 0.63 53.0 3.25e-01 100.0% 79.7%
5018490 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.62 46.0 3.62e-01 84.9% 34.4%
1674783 243.1.1.15 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › T4BSS_DotI_IcmL 0.62 53.0 3.92e-01 96.2% 48.2%
4994610 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.62 51.0 4.16e-01 100.0% 63.5%
4947601 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.62 52.0 3.30e-01 100.0% 74.8%
4599318 2.1.1.299 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 0.61 49.0 4.45e-01 100.0% 63.7%
4980670 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 47.0 3.70e-01 86.8% 40.0%
4847872 230.1.1.5 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.61 47.0 3.74e-01 86.8% 42.2%
4997160 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 45.0 3.65e-01 83.0% 42.0%
5045369 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 47.0 3.72e-01 88.7% 40.9%
4940002 223.1.1.122 a+b three layers › Profilin-like › sensor domains › sensor domains › HisKA 0.60 46.0 3.06e-01 84.9% 21.5%
5018817 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 45.0 3.44e-01 83.0% 35.0%
4958693 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 46.0 3.58e-01 86.8% 38.3%
3658408 4325.1.1.13 mixed a+b and a/b › YegP-like › YegP-like › YegP-like › DUF4371 0.60 49.0 4.54e-01 100.0% 94.7%
3639738 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.60 46.0 4.39e-01 90.6% 80.6%
5069591 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.60 47.0 3.55e-01 94.3% 40.6%
5051877 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.60 44.0 3.34e-01 83.0% 32.3%
4106744 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.59 45.0 3.30e-01 88.7% 58.8%
5069528 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 43.0 3.38e-01 79.2% 37.3%
3914493 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.59 45.0 2.63e-01 90.6% 12.8%
4959116 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.59 46.0 3.07e-01 86.8% 21.5%
3715079 3186.1.1.0 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.59 48.0 3.90e-01 90.6% 47.1%
5030532 1.1.1.8 beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.59 48.0 3.75e-01 90.6% 66.1%
3285689 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.59 49.0 4.10e-01 98.1% 71.0%
4988947 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.58 43.0 3.18e-01 81.1% 29.0%
3272654 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.58 51.0 4.17e-01 100.0% 83.0%
3249479 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 46.0 3.97e-01 88.7% 61.2%
4978348 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.58 52.0 4.41e-01 100.0% 70.6%
5009916 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.57 45.0 3.67e-01 84.9% 66.7%
4960853 230.5.1.4 a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7_1 0.57 44.0 3.36e-01 86.8% 87.1%
4946870 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.57 46.0 3.48e-01 90.6% 60.7%
4989231 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.57 48.0 3.74e-01 92.5% 46.1%
3601580 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 47.0 2.91e-01 94.3% 56.1%
4980684 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 47.0 2.78e-01 94.3% 42.6%
5002723 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.57 42.0 3.35e-01 83.0% 37.7%
5017990 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 3.45e-01 83.0% 40.9%
5048718 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.56 49.0 2.89e-01 96.2% 20.0%
4991330 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.56 48.0 3.93e-01 100.0% 60.0%
5054386 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.56 45.0 3.76e-01 100.0% 58.2%
377 2.1.1.90 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › ssDBP 0.55 44.0 4.06e-01 98.1% 94.9%
5032197 1.1.1.18 beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp_protease_2 0.55 45.0 3.59e-01 88.7% 65.5%
3817253 708.1.1.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.55 44.0 3.23e-01 96.2% 38.2%
4939419 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 48.0 4.17e-01 100.0% 71.8%
3396138 383.1.2.0 few secondary structure elements › Defensin-like › Defensin-related › Laterosporulin 0.54 43.0 4.16e-01 88.7% 96.7%
3512269 79.1.1.16 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › DUF1983 0.54 42.0 3.69e-01 94.3% 63.3%
5018391 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.54 43.0 3.26e-01 94.3% 73.8%
4980552 223.1.1.25 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 43.0 3.33e-01 88.7% 40.8%
5000939 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.52 43.0 3.69e-01 100.0% 76.8%
D2 medium residues 90-162
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.78 43.0 4.19e-01 71.2% 50.6%
1ryuA00 1.10.150.60 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain 0.70 55.0 4.67e-01 84.9% 80.8%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.66 52.0 4.14e-01 84.9% 84.2%
4hhyC01 1.20.142.10 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain 0.65 48.0 4.06e-01 80.8% 76.3%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.64 48.0 3.79e-01 80.8% 74.3%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.63 45.0 4.36e-01 93.2% 65.9%
2ap3A00 1.20.120.570 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YkyA-like 0.62 47.0 3.43e-01 83.6% 30.7%
3d36B02 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.61 47.0 5.04e-01 86.3% 96.7%
2r9iA00 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.61 47.0 4.85e-01 84.9% 84.5%
2xgjA04 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.61 54.0 4.43e-01 100.0% 64.4%
4dylA02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.60 47.0 4.36e-01 84.9% 72.3%
1aluA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 47.0 3.69e-01 91.8% 41.4%
5tprA02 1.20.1090.10 Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain 0.53 47.0 3.33e-01 97.3% 43.5%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988178 633.29.1.0 alpha bundles › Bromodomain-like › Putative uncharacterized protein PAV1-137 › Putative uncharacterized protein PAV1-137 0.62 42.0 3.87e-01 78.1% 54.7%
3729252 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.59 47.0 4.04e-01 86.3% 86.1%
3936262 601.2.1.5 alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr 0.58 48.0 4.20e-01 91.8% 77.3%
4250281 593.1.1.1 alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.55 48.0 3.82e-01 100.0% 64.5%