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OR613478.1__WNT45343.1__SEA_BABYDOTZ_90__00090

Bact-Vir

OR613478.1__WNT45343.1__SEA_BABYDOTZ_90__00090

Identity

Accession:
OR613478 ↗
Kingdom:
phage

Quality

66.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-64
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eqzF00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.69 52.0 4.21e-01 80.7% 52.3%
4csrA00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.69 45.0 3.90e-01 100.0% 43.2%
2z3xA00 6.10.10.80 Special › Helix non-globular › Helicase, Ruva Protein; domain 3 › Small, acid-soluble spore protein, alpha/beta type-like 0.69 45.0 4.56e-01 100.0% 67.9%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.68 46.0 4.07e-01 98.2% 50.6%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.67 49.0 4.11e-01 94.7% 46.8%
2bbrA01 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.66 48.0 4.28e-01 86.0% 51.7%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.66 43.0 3.98e-01 98.2% 52.8%
3efzB00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.66 45.0 3.00e-01 94.7% 18.2%
3nivC02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.65 48.0 3.73e-01 100.0% 36.3%
4kjmA02 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 39.0 4.00e-01 94.7% 63.6%
4ceiA05 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.63 49.0 3.62e-01 87.7% 81.5%
3axjB01 1.20.58.190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 1 0.63 45.0 3.27e-01 100.0% 27.7%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.63 50.0 4.90e-01 91.2% 81.5%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 42.0 4.22e-01 94.7% 68.4%
4wzsB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.62 44.0 3.65e-01 78.9% 46.0%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 40.0 4.09e-01 98.2% 70.9%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 47.0 3.35e-01 87.7% 33.9%
1v1gA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.60 46.0 3.27e-01 84.2% 40.4%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.60 39.0 3.88e-01 91.2% 65.5%
5gmkZ01 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.59 46.0 3.07e-01 84.2% 22.0%
6tkyA03 1.20.58.740 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C 0.59 47.0 3.68e-01 87.7% 86.1%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.25e-01 98.2% 54.9%
1aabA00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.58 49.0 4.42e-01 100.0% 73.5%
5ow2A00 1.10.10.930 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.56 44.0 4.06e-01 87.7% 65.8%
2r4gA02 1.10.10.1970 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TERT catalytic subunit-like 0.56 44.0 4.30e-01 86.0% 78.1%
2fe3B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.63e-01 78.9% 98.8%
1gt0D00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.56 47.0 4.31e-01 100.0% 77.2%
2f9iD00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.56 40.0 2.63e-01 75.4% 51.4%
7sjrB01 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.56 46.0 3.31e-01 93.0% 55.5%
3ooqA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.56 45.0 3.00e-01 98.2% 100.0%
7l4aA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 50.0 3.32e-01 100.0% 99.5%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 39.0 4.07e-01 75.4% 84.9%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.55 42.0 3.27e-01 87.7% 89.4%
4oj5B01 3.30.2020.50 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.55 38.0 3.37e-01 82.5% 51.2%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 44.0 3.45e-01 87.7% 67.8%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.54 49.0 4.38e-01 100.0% 87.5%
1uj8A00 1.10.10.600 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IscX-like 0.54 37.0 3.42e-01 70.2% 64.4%
3keyA02 3.30.1370.230 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Stn1, C-terminal wHTH domain 0.54 44.0 3.80e-01 89.5% 65.9%
1zq9A02 1.10.8.480 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 37.0 3.24e-01 73.7% 64.3%
2ph5A02 3.30.360.30 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › homospermidine synthase like 0.53 46.0 2.96e-01 100.0% 71.6%
2rh8A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 39.0 2.58e-01 86.0% 31.4%
2o5iN05 1.10.40.90 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.52 38.0 3.94e-01 86.0% 88.5%
3g0oA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 41.0 3.27e-01 87.7% 66.9%
3hwrA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.52 44.0 3.37e-01 98.2% 41.1%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.52 44.0 4.21e-01 96.5% 81.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3733392 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.74 49.0 3.89e-01 100.0% 33.9%
3785121 4120.1.1.0 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.73 63.0 5.83e-01 100.0% 81.3%
3731893 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.72 63.0 4.04e-01 100.0% 23.5%
5067754 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 47.0 4.84e-01 96.5% 72.7%
5076064 873.1.1.0 a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.70 61.0 4.11e-01 100.0% 47.5%
3110584 148.1.1.1 alpha arrays › Histone-like › Histone-related › Histone › Histone 0.69 52.0 4.15e-01 80.7% 51.4%
3806413 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.68 54.0 3.91e-01 86.0% 34.8%
3597285 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.67 50.0 4.16e-01 80.7% 56.0%
3345966 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.67 53.0 4.86e-01 86.0% 72.0%
3378555 4133.1.1.2 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Tic110 0.66 54.0 3.69e-01 87.7% 27.0%
4982784 148.1.3.42 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid 0.66 43.0 4.27e-01 98.2% 63.3%
3455096 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.65 55.0 3.63e-01 100.0% 23.6%
4952255 129.1.1.11 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C 0.65 46.0 3.57e-01 100.0% 33.1%
4341780 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.65 45.0 4.30e-01 96.5% 63.1%
5064786 101.1.2.181 alpha arrays › HTH › HTH › winged helix domain › MCM_C 0.64 47.0 4.50e-01 77.2% 76.9%
5039049 601.7.1.2 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN 0.63 51.0 4.50e-01 93.0% 67.8%
5082532 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 49.0 4.56e-01 100.0% 67.1%
5045789 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.62 48.0 4.29e-01 89.5% 67.4%
4950656 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.62 49.0 3.76e-01 86.0% 61.5%
4177977 3962.1.1.0 alpha arrays › N-terminal helical domain in restriction-modification system methylation subunit-like › N-terminal helical domain in restriction-modification system methylation subunit › N-terminal helical domain in restriction-modification system methylation subunit 0.62 43.0 3.15e-01 96.5% 27.3%
5028212 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.62 51.0 3.73e-01 89.5% 39.9%
4974358 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.61 47.0 3.96e-01 87.7% 72.4%
3496552 190.1.1.3 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box_2 0.60 51.0 4.50e-01 100.0% 67.8%
3430595 219.1.1.16 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 0.60 54.0 3.53e-01 100.0% 94.6%
5023530 4957.1.1.0 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.60 43.0 4.27e-01 100.0% 71.7%
4989195 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.59 49.0 3.97e-01 94.7% 66.1%
4960513 6049.1.1.0 alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.59 46.0 4.35e-01 91.2% 97.3%
4963030 103.2.1.1 alpha arrays › RuvA-C › ATP cone › ATP cone › Ribonuc_red_lgN 0.59 51.0 4.06e-01 100.0% 56.7%
4027821 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.59 48.0 4.68e-01 100.0% 95.4%
3651890 604.1.1.3 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › MAP65_ASE1 0.58 49.0 3.40e-01 100.0% 28.6%
4426191 101.1.3.26 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › YcbB 0.58 47.0 3.39e-01 87.7% 39.4%
4537810 2004.1.1.59 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.57 47.0 3.37e-01 100.0% 31.2%
3212897 198.1.1.1 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2 0.57 40.0 3.74e-01 75.4% 61.3%
3600731 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.57 48.0 3.82e-01 100.0% 46.1%
3678817 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.57 50.0 3.12e-01 100.0% 17.5%
3666279 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.56 38.0 3.89e-01 87.7% 74.5%
3556512 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.55 49.0 3.88e-01 100.0% 48.7%
4099509 101.1.15.3 alpha arrays › HTH › HTH › HAT1, C-terminal domain › HAT1_C_fung 0.55 40.0 4.06e-01 75.4% 87.3%
4986010 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 49.0 3.36e-01 100.0% 36.1%
3547029 148.1.3.221 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › NPHP3_hel 0.54 36.0 3.22e-01 89.5% 45.9%
3452315 4070.1.1.0 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like 0.54 48.0 3.32e-01 100.0% 61.6%
3436578 3755.4.1.17 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Rx_N 0.54 49.0 3.57e-01 100.0% 70.7%
3400497 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.54 45.0 2.94e-01 100.0% 21.7%
135426 129.1.1.11 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C 0.53 43.0 3.42e-01 98.2% 40.8%
4982919 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.53 40.0 3.34e-01 86.0% 43.5%
4939483 129.1.1.11 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C 0.53 46.0 3.51e-01 96.5% 90.2%
4995195 2488.1.1.1 a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase 0.52 45.0 2.98e-01 94.7% 23.0%
4157944 101.1.2.39 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpA 0.52 38.0 3.61e-01 84.2% 72.0%
3399039 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.52 44.0 2.86e-01 100.0% 21.3%
4489939 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.52 38.0 3.76e-01 82.5% 85.0%
5050371 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.35e-01 87.7% 70.5%
D2 high residues 77-131
PDB