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OR613482.1__WNT45621.1__SEA_STUBBYSAIGEY_98__00093

Bact-Vir

OR613482.1__WNT45621.1__SEA_STUBBYSAIGEY_98__00093

Identity

Accession:
OR613482 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bixzunavirus› Mycobacterium_phage_StubbySaigey

TaxID: 3078579

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-93
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.76 69.0 5.50e-01 100.0% 67.3%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.67 62.0 5.65e-01 100.0% 85.8%
3egiA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 34.0 2.71e-01 72.3% 97.4%
4lrjA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 35.0 3.76e-01 81.9% 84.9%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3266965 378.1.2.2 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › Inactive Tox-GHH domain of teneurin › HNH_3 0.90 62.0 6.95e-01 71.1% 93.8%
89916 378.1.1.0 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.76 69.0 5.50e-01 100.0% 67.3%
8233 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.76 69.0 5.50e-01 100.0% 67.3%
3695527 378.1.1.6 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › zf-His_Me_endon 0.71 65.0 5.71e-01 100.0% 81.7%
3539740 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.71 61.0 5.26e-01 91.6% 81.6%
3586841 378.1.1.7 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › NUMOD4,HNH_3 0.67 61.0 5.47e-01 100.0% 90.4%
3250588 109.4.1.791 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_17 0.53 36.0 3.50e-01 84.3% 61.1%
4999197 7512.1.1.18 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycogen_syn 0.53 42.0 2.93e-01 86.7% 58.3%
3730939 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.53 43.0 3.71e-01 94.0% 95.9%
3386240 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.53 36.0 2.55e-01 71.1% 94.9%
5029523 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.53 31.0 3.69e-01 90.4% 97.9%
D2 medium residues 105-146
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2csvA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 42.0 3.64e-01 73.8% 44.4%
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.61 50.0 4.98e-01 92.9% 93.0%
4wz0A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 53.0 3.94e-01 100.0% 89.9%
4tn3A01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.60 41.0 4.20e-01 73.8% 82.5%
2ffwA00 4.10.830.40 Few Secondary Structures › Irregular › 30s Ribosomal Protein S14; Chain N › 0.57 38.0 3.31e-01 71.4% 44.9%
6xi7B02 3.30.60.20 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.56 38.0 3.88e-01 73.8% 79.5%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.54 43.0 3.36e-01 88.1% 63.4%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.54 38.0 3.21e-01 76.2% 84.9%
2yqpA00 3.30.60.220 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.51 40.0 3.64e-01 90.5% 91.7%
1g2dC03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.50 31.0 3.43e-01 71.4% 92.6%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3895782 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.74 51.0 4.15e-01 73.8% 57.5%
3863918 904.1.1.23 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › TRIM_CC 0.73 52.0 3.28e-01 76.2% 20.9%
3313353 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.72 49.0 4.49e-01 71.4% 87.3%
3921616 904.1.1.22 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box, TRIM_CC 0.69 48.0 3.06e-01 76.2% 21.4%
3565327 101.1.2.284 ↗ alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.66 49.0 3.32e-01 78.6% 25.3%
3609587 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 48.0 4.20e-01 83.3% 61.4%
3904954 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.66 45.0 4.20e-01 73.8% 58.2%
3879027 376.1.4.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › zf-B_box 0.65 44.0 4.42e-01 73.8% 71.1%
3180673 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.65 47.0 4.13e-01 83.3% 61.4%
5039132 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.62 49.0 3.06e-01 97.6% 14.7%
8592 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.61 42.0 3.87e-01 73.8% 54.2%
2126729 2003.1.2.11 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 42.0 3.14e-01 76.2% 26.7%
3813038 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.60 40.0 4.15e-01 71.4% 75.0%
4393935 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.58 42.0 3.28e-01 71.4% 58.8%
5001015 2005.1.1.11 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ATP_bind_3 0.58 46.0 2.91e-01 100.0% 15.7%
165221 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 40.0 3.55e-01 76.2% 45.7%
2650943 377.1.1.29 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › TtuA_LIM_N 0.57 39.0 4.09e-01 73.8% 93.8%
3401887 377.9.1.6 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › YL1_C 0.57 47.0 4.89e-01 88.1% 92.5%
3422360 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.57 39.0 4.06e-01 73.8% 85.7%
3822672 376.1.1.59 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-B_box 0.55 41.0 3.73e-01 83.3% 58.3%
3806562 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.54 38.0 3.80e-01 78.6% 73.3%
3305957 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.54 40.0 3.74e-01 83.3% 63.6%
3852494 386.1.1.234 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2, zf-H2C2_2, zf-C2H2_4 0.54 39.0 2.67e-01 85.7% 29.7%
3781281 377.9.1.4 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-Mss51 0.53 48.0 3.93e-01 100.0% 69.3%
None — 0.53 39.0 3.26e-01 85.7% 64.7%
3901679 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.53 39.0 2.90e-01 85.7% 43.0%
3487457 376.1.3.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.53 35.0 3.78e-01 71.4% 96.7%
3423001 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.53 36.0 3.86e-01 71.4% 100.0%
4028462 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.53 38.0 3.97e-01 81.0% 97.1%
3571398 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.52 38.0 2.59e-01 85.7% 29.5%
3700937 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.52 36.0 3.70e-01 71.4% 75.0%
1032271 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.52 34.0 3.09e-01 71.4% 44.3%
3891700 904.1.1.26 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box_Trim66 0.51 37.0 3.69e-01 71.4% 71.1%
185028 377.9.1.2 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-HIT 0.51 40.0 3.64e-01 90.5% 91.7%
3217069 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 33.0 3.50e-01 81.0% 90.0%