Back to structures

OR613483.1__WNT45848.1__SEA_PURDUEPETE_75__00075

Bact-Vir

OR613483.1__WNT45848.1__SEA_PURDUEPETE_75__00075

Identity

Accession:
OR613483 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.78 46.0 3.87e-01 100.0% 36.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 46.0 4.65e-01 74.6% 62.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 44.0 4.58e-01 74.6% 65.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 4.62e-01 79.1% 63.8%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 40.0 3.89e-01 70.1% 52.0%
3aiiA02 2.40.240.100 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › 0.65 48.0 4.89e-01 97.0% 81.2%
2j3vA02 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.63 52.0 3.64e-01 89.6% 61.3%
4k3bA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.61 52.0 4.77e-01 100.0% 94.6%
2qdfA03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 52.0 5.06e-01 100.0% 94.8%
6j09A03 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 52.0 4.86e-01 98.5% 100.0%
1qs1A01 3.90.176.10 Alpha Beta › Alpha-Beta Complex › Toxin ADP-ribosyltransferase; Chain A, domain 1 › Toxin ADP-ribosyltransferase; Chain A, domain 1 0.59 50.0 3.50e-01 91.0% 59.1%
3ng0A01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.59 51.0 4.51e-01 100.0% 75.7%
3rh7A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 51.0 4.19e-01 100.0% 58.1%
6scxA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 51.0 4.13e-01 100.0% 61.5%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 37.0 2.94e-01 70.1% 32.8%
2iz4A01 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 36.0 4.06e-01 92.5% 85.7%
5zliA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.58 50.0 4.34e-01 100.0% 73.6%
4h3sA02 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.58 49.0 4.15e-01 100.0% 79.2%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.57 38.0 4.09e-01 100.0% 83.9%
1vk6A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 50.0 4.05e-01 100.0% 61.8%
5c7qB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.57 48.0 3.65e-01 100.0% 48.3%
2d3aA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.56 49.0 4.33e-01 100.0% 82.2%
3a6sA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 49.0 4.05e-01 100.0% 66.4%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 35.0 3.49e-01 73.1% 60.0%
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 50.0 4.57e-01 100.0% 80.9%
1k2eA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 48.0 3.72e-01 100.0% 65.8%
4qkyA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.55 46.0 4.54e-01 100.0% 98.6%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 4.16e-01 100.0% 98.0%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.54 45.0 3.72e-01 100.0% 62.6%
3q6bA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 45.0 4.43e-01 100.0% 98.6%
3hhjB00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 45.0 3.74e-01 100.0% 67.2%
3lhoA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.53 36.0 2.54e-01 89.6% 20.1%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.53 45.0 3.73e-01 100.0% 66.7%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 38.0 3.30e-01 80.6% 94.6%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.52 45.0 3.54e-01 98.5% 96.6%
1vc9A01 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.52 44.0 3.71e-01 100.0% 66.4%
3nwzB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 37.0 2.96e-01 79.1% 66.2%
1dfaA01 2.170.16.10 Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain 0.51 45.0 3.20e-01 98.5% 93.1%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3198325 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.78 50.0 3.15e-01 100.0% 14.0%
4938828 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 44.0 4.65e-01 100.0% 65.0%
4135259 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.74 46.0 4.69e-01 74.6% 64.6%
3356712 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 45.0 5.33e-01 70.1% 93.3%
3480049 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.72 43.0 2.70e-01 76.1% 11.4%
4947785 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.71 57.0 5.72e-01 98.5% 84.1%
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.69 43.0 4.43e-01 74.6% 66.2%
3802388 239.1.1.0 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like 0.66 57.0 5.36e-01 100.0% 78.3%
5037211 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.65 50.0 5.08e-01 98.5% 84.6%
3988250 3114.1.1.1 beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP 0.65 57.0 5.19e-01 100.0% 98.9%
4491981 3114.1.1.1 beta sandwiches › Mucin-binding protein domain › Mucin-binding protein domain › Mucin-binding protein domain › MucBP 0.64 56.0 5.31e-01 98.5% 95.0%
4061290 239.1.1.6 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C2 0.64 55.0 5.34e-01 98.5% 86.3%
3817355 1.1.9.9 beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH 0.62 53.0 4.23e-01 92.5% 70.8%
3585671 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 35.0 3.97e-01 71.6% 76.0%
1893388 237.1.1.8 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPrib_exo_Tox 0.61 49.0 3.48e-01 89.6% 60.3%
4977206 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 36.0 3.79e-01 71.6% 65.0%
3740739 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.60 54.0 3.87e-01 100.0% 44.7%
4021438 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.59 52.0 3.81e-01 100.0% 47.0%
3598222 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 38.0 3.83e-01 74.6% 65.7%
4954981 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.58 50.0 3.78e-01 100.0% 51.2%
1726001 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.57 49.0 3.67e-01 100.0% 47.8%
3708407 4.1.1.18 beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.57 38.0 3.58e-01 79.1% 55.3%
4990017 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 48.0 3.68e-01 100.0% 50.6%
3264285 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.56 49.0 3.78e-01 100.0% 72.3%
3970070 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.54 46.0 3.74e-01 100.0% 62.1%
3934729 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.54 42.0 3.38e-01 97.0% 44.8%
3186883 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.63e-01 89.6% 92.2%
4985309 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 44.0 3.64e-01 100.0% 64.4%
3731145 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.53 44.0 3.61e-01 98.5% 49.6%
4003553 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.53 41.0 2.59e-01 91.0% 26.0%
3832887 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 44.0 4.08e-01 98.5% 73.5%
3520846 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 39.0 3.47e-01 98.5% 55.0%
4327607 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.52 42.0 3.29e-01 100.0% 53.9%
3504233 1.1.1.0 beta barrels › cradle loop barrel › RIFT-related › acid protease 0.51 38.0 3.42e-01 98.5% 55.0%
3334785 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.51 39.0 3.20e-01 97.0% 43.1%
None 0.51 42.0 3.27e-01 100.0% 49.7%
3194063 2.1.1.37 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.51 39.0 3.20e-01 86.6% 59.3%
3343890 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.51 38.0 3.60e-01 97.0% 65.9%
3175039 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.50 39.0 3.21e-01 97.0% 45.6%
2674741 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.50 32.0 3.43e-01 80.6% 76.4%
3370298 1.1.1.3 beta barrels › cradle loop barrel › RIFT-related › acid protease › RVP 0.50 38.0 3.31e-01 98.5% 50.9%
3337491 1.1.2.29 beta barrels › cradle loop barrel › RIFT-related › double psi › RVP 0.50 38.0 3.34e-01 97.0% 53.8%