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OR613483.1__WNT45964.1__SEA_PURDUEPETE_226__00192
Bact-VirOR613483.1__WNT45964.1__SEA_PURDUEPETE_226__00192
Identity
- Accession:
- OR613483 ↗
- Kingdom:
- phage
Quality
67.2
mean pLDDT
Taxonomy
TaxID: 3069516
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 111-145
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24232.2 best | DUF7445 | 42.7 | 9.30e-11 | 100.0% | 23.9% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.64 | 53.0 | 4.65e-01 | 100.0% | 89.3% |
| 3pp8A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 48.0 | 3.45e-01 | 97.1% | 49.2% |
| 5t3uB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.59 | 46.0 | 3.27e-01 | 100.0% | 41.4% |
| 3p4gD00 | 2.160.20.160 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.58 | 48.0 | 2.87e-01 | 100.0% | 11.9% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 38.0 | 2.88e-01 | 97.1% | 39.4% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4887357 | 4959.1.1.2 ↗ | a+b complex topology › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › first helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_3, RNA_pol_Rpb1_4 | 0.78 | 64.0 | 4.09e-01 | 97.1% | 19.3% |
| 1907442 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.58 | 46.0 | 3.29e-01 | 100.0% | 39.8% |
D2
medium
residues 23-97
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24232.2 best | DUF7445 | 120.4 | 9.80e-35 | 100.0% | 50.0% |
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o58V00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.71 | 47.0 | 5.14e-01 | 85.3% | 86.4% |
| 1vq8U00 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.71 | 45.0 | 5.06e-01 | 80.0% | 90.6% |
| 1vx7000 | 2.30.170.20 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 | 0.70 | 46.0 | 4.99e-01 | 84.0% | 82.3% |
| 1h2iA01 | 3.30.390.80 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 | 0.51 | 35.0 | 2.85e-01 | 70.7% | 58.1% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4959094 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.74 | 44.0 | 5.04e-01 | 70.7% | 81.8% |
| 1832152 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.70 | 45.0 | 4.89e-01 | 85.3% | 80.6% |
| 2878975 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.68 | 45.0 | 4.53e-01 | 88.0% | 67.1% |
| 1442743 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.68 | 45.0 | 4.88e-01 | 85.3% | 83.6% |
| 3224881 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.68 | 45.0 | 3.72e-01 | 85.3% | 37.8% |
| 3731209 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.68 | 45.0 | 4.08e-01 | 85.3% | 51.0% |
| 3499880 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.67 | 44.0 | 3.78e-01 | 85.3% | 40.8% |
| 3680502 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.67 | 44.0 | 3.62e-01 | 85.3% | 36.4% |
| 4023822 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.66 | 45.0 | 3.60e-01 | 85.3% | 34.7% |
| 4932487 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.65 | 43.0 | 4.43e-01 | 80.0% | 72.9% |
| 3552232 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.64 | 44.0 | 3.63e-01 | 85.3% | 38.5% |
| 3808068 | 207.1.1.124 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › At3g27290_F_box_C | 0.64 | 45.0 | 3.14e-01 | 73.3% | 34.2% |
| 4965516 | 377.1.1.132 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF7561 | 0.61 | 43.0 | 4.62e-01 | 73.3% | 98.5% |
| 3361724 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.59 | 45.0 | 4.26e-01 | 96.0% | 70.0% |
| 3380586 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.54 | 42.0 | 2.85e-01 | 90.7% | 58.3% |
| 4025931 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.53 | 45.0 | 3.81e-01 | 97.3% | 93.8% |
| 4473615 | 513.1.1.1 ↗ | a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 | 0.52 | 25.0 | 2.39e-01 | 76.0% | 35.1% |
| 3667921 | 601.21.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › FAD-dependent thiol oxidase › FAD-dependent thiol oxidase › Evr1_Alr | 0.52 | 45.0 | 3.06e-01 | 96.0% | 36.7% |
| 4504547 | 377.1.1.6 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Ribosomal_L24e | 0.52 | 44.0 | 3.34e-01 | 97.3% | 64.2% |
| 4114703 | 359.1.1.0 ↗ | few secondary structure elements › Bowman-Birk inhibitor, BBI-like › Bowman-Birk inhibitor, BBI-like › Bowman-Birk inhibitor, BBI-like | 0.52 | 29.0 | 3.17e-01 | 77.3% | 66.7% |
| 4985757 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.51 | 38.0 | 3.53e-01 | 82.7% | 77.0% |
| 4471333 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.50 | 40.0 | 3.16e-01 | 93.3% | 52.4% |