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OR636717.1__WOZ57860.1__ZP9_00046__00044

Bact-Vir

OR636717.1__WOZ57860.1__ZP9_00046__00044

Identity

Accession:
OR636717 ↗
Kingdom:
phage

Quality

90.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-68_122-199
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07105.17 best DUF1367 79.3 4.40e-22 76.5% 38.4%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.65 55.0 4.99e-01 99.0% 67.4%
2cxiA03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.62 33.0 3.83e-01 98.0% 72.9%
3x1oA00 1.20.120.1790 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 46.0 4.10e-01 81.4% 85.9%
4r7zA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 45.0 3.22e-01 79.4% 92.1%
4uoyA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 45.0 3.59e-01 79.4% 47.0%
7k98E03 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.59 33.0 3.90e-01 98.0% 80.9%
4ritA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 43.0 3.36e-01 76.5% 43.6%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 43.0 4.20e-01 80.4% 86.2%
3l60A01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.56 40.0 3.23e-01 76.5% 89.5%
4obuA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 42.0 3.23e-01 79.4% 43.2%
2hg7A00 3.30.56.60 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › XkdW-like 0.55 32.0 3.83e-01 96.1% 95.0%
2kjwA00 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.55 41.0 4.23e-01 97.1% 83.3%
2qmaA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 40.0 3.80e-01 77.5% 76.0%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 41.0 4.27e-01 81.4% 96.9%
6qj2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 43.0 2.97e-01 85.3% 37.9%
1s28A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 38.0 3.54e-01 73.5% 90.8%
2ebbA00 3.30.1360.20 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Transcriptional coactivator/pterin dehydratase 0.53 38.0 3.94e-01 78.4% 80.2%
2debA03 3.30.559.70 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 0.53 46.0 3.38e-01 98.0% 98.9%
1w1wA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 2.94e-01 87.3% 29.9%
4w8iA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 39.0 3.71e-01 78.4% 79.3%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 45.0 3.08e-01 100.0% 53.2%
5t3dA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.50 38.0 3.24e-01 81.4% 77.7%
3wrwA01 3.40.50.12020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Uncharacterised protein family UPF0261, NN domain 0.50 38.0 3.22e-01 82.4% 93.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980273 829.1.1.3 a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 0.95 89.0 8.19e-01 96.1% 81.6%
5079949 829.1.1.3 a+b duplicates or obligate multimers › NinB › NinB › NinB › DUF1367 0.91 81.0 8.47e-01 96.1% 100.0%
5054374 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 26.0 3.42e-01 83.3% 64.8%
7698 829.1.1.1 a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB 0.65 55.0 4.99e-01 99.0% 67.4%
5056954 305.1.1.0 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase 0.65 36.0 4.14e-01 100.0% 73.3%
5043893 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.63 31.0 3.73e-01 86.3% 68.6%
3907036 304.163.1.1 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 0.63 35.0 3.93e-01 97.1% 68.8%
3668622 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.61 47.0 4.28e-01 82.4% 85.9%
4968475 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 25.0 2.97e-01 86.3% 54.3%
4091135 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.59 31.0 3.64e-01 94.1% 72.9%
4880817 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.58 43.0 4.10e-01 78.4% 82.4%
3812542 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 32.0 3.80e-01 90.2% 84.6%
4050573 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.56 36.0 4.17e-01 75.5% 95.7%
3583046 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 30.0 3.78e-01 91.2% 94.5%
4945 4989.1.1.1 a+b two layers › XkdW-like › XkdW-like › XkdW-like › XkdW 0.55 32.0 3.83e-01 96.1% 95.0%
3782485 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.55 34.0 3.35e-01 81.4% 55.7%
3216641 3016.1.1.4 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Pyridoxal_deC 0.54 41.0 3.96e-01 81.4% 80.0%
4567341 4989.1.1.1 a+b two layers › XkdW-like › XkdW-like › XkdW-like › XkdW 0.53 32.0 3.82e-01 96.1% 98.3%
3713128 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.53 35.0 4.11e-01 89.2% 100.0%
3205139 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.52 39.0 3.77e-01 78.4% 92.9%
3487129 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 37.0 3.95e-01 81.4% 86.7%
3686939 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.51 36.0 3.53e-01 74.5% 100.0%
4929473 304.39.1.0 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain 0.51 39.0 4.28e-01 87.3% 98.8%
4970952 3715.1.1.1 a+b two layers › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal protein L22e › Ribosomal_L22e 0.51 38.0 4.08e-01 91.2% 96.5%
4185373 101.1.9.5 alpha arrays › HTH › HTH › Putative DNA-binding domain › B5 0.50 35.0 3.77e-01 88.2% 87.1%
3568034 5050.1.1.2 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › PTR2 0.50 43.0 2.72e-01 94.1% 38.7%
D2 medium residues 69-121
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3crjC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.81 62.0 4.25e-01 83.0% 32.4%
1v4gA01 6.10.140.800 Special › Helix non-globular › Helix Hairpins › 0.77 55.0 5.01e-01 75.5% 58.0%
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.75 52.0 5.60e-01 73.6% 100.0%
2kw7A00 3.10.310.50 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.74 61.0 4.34e-01 92.5% 35.0%
7kznP01 3.30.740.10 Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 0.73 53.0 4.39e-01 79.2% 44.1%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.70 59.0 4.65e-01 100.0% 56.2%
2f93B00 1.10.287.470 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 54.0 5.53e-01 90.6% 100.0%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.68 56.0 4.45e-01 92.5% 56.9%
5u1xA01 1.10.287.940 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › atp-gated p2x4 ion channel 0.67 51.0 5.33e-01 88.7% 97.8%
6lpfA01 1.10.730.20 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › 0.67 54.0 3.93e-01 94.3% 31.9%
2i2xB01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.67 54.0 4.44e-01 92.5% 50.0%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.65 48.0 5.08e-01 84.9% 91.3%
1o9gA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.63 46.0 5.05e-01 83.0% 97.7%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.63 47.0 3.39e-01 81.1% 30.6%
4fxxB01 6.10.140.1790 Special › Helix non-globular › Helix Hairpins › 0.63 53.0 4.76e-01 92.5% 81.9%
1aueB00 1.20.120.150 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › FKBP12-rapamycin binding domain 0.62 48.0 4.12e-01 94.3% 51.1%
5b1aC01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 47.0 4.41e-01 84.9% 67.6%
3nymA00 6.10.290.10 Special › Helix non-globular › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.61 48.0 3.79e-01 90.6% 85.5%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.60 43.0 4.35e-01 75.5% 76.9%
3kwoA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 50.0 3.73e-01 96.2% 36.9%
3t46A00 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.58 49.0 4.42e-01 98.1% 68.0%
3rc3A05 1.20.58.1080 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 46.0 3.69e-01 90.6% 42.5%
4g09A03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 37.0 3.69e-01 71.7% 63.6%
1kaeA03 1.20.5.1300 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.57 37.0 3.67e-01 71.7% 63.6%
4ar9A02 1.10.390.20 Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › 0.53 44.0 3.36e-01 100.0% 38.7%
3vkhA08 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 2.51e-01 90.6% 31.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962155 191.1.1.49 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 0.90 77.0 6.40e-01 90.6% 68.2%
3960067 191.1.1.49 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_13_2 0.86 67.0 6.07e-01 83.0% 75.7%
4947303 5060.1.1.0 alpha bundles › V-type ATP synthase subunit C › V-type ATP synthase subunit C › V-type ATP synthase subunit C 0.80 69.0 5.28e-01 92.5% 63.6%
3591320 5043.1.1.2 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12 0.78 65.0 5.95e-01 94.3% 70.0%
4180476 539.1.1.0 few secondary structure elements › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like › Crustacean Hyperglycemic Hormone (CHH)-like 0.75 52.0 5.19e-01 73.6% 70.9%
4998760 2003.1.2.300 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GGR_cat 0.75 66.0 3.92e-01 96.2% 22.6%
119247 3105.1.1.1 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › TPM_phosphatase 0.74 61.0 4.34e-01 92.5% 35.0%
3789422 210.2.1.3 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C_2 0.74 62.0 3.93e-01 100.0% 20.3%
3282145 618.2.1.1 a+b complex topology › DNA mimic protein DMP12-like › Immunity protein CdiI › Immunity protein CdiI › DUF6247 0.73 59.0 5.86e-01 92.5% 87.3%
5020952 605.1.1.356 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF2178 0.72 57.0 4.39e-01 90.6% 39.2%
4002336 3105.1.1.4 a+b three layers › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › thylakoid acid phosphatase domain-related › MOLO1 0.71 53.0 3.80e-01 84.9% 26.5%
3630756 5043.1.1.2 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › SPC12 0.71 58.0 5.30e-01 90.6% 72.9%
3213282 616.1.1.21 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › DUF4473 0.68 58.0 5.18e-01 96.2% 72.0%
3472708 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.67 54.0 3.64e-01 86.8% 24.2%
5027220 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.67 54.0 5.28e-01 92.5% 83.3%
4034326 5043.1.1.0 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like 0.65 51.0 5.14e-01 90.6% 89.1%
3837288 708.1.2.1 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP 0.62 48.0 3.50e-01 86.8% 29.7%
4399203 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.62 51.0 3.81e-01 100.0% 47.7%
4302386 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.61 50.0 3.76e-01 100.0% 47.4%
4043184 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.60 49.0 4.02e-01 98.1% 71.8%
3178367 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.60 46.0 2.74e-01 84.9% 70.9%
5006643 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.59 48.0 3.59e-01 96.2% 34.5%
3241723 192.17.1.6 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like › CC2D1A-B_DM14 0.58 45.0 4.14e-01 90.6% 62.7%
4319920 7524.1.1.2 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Histidinol_dh 0.58 44.0 2.62e-01 84.9% 73.0%
4181278 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.56 42.0 3.88e-01 84.9% 64.0%
4959230 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.08e-01 92.5% 92.3%