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OR670062.1__WQM42293.1__X__00004

Bact-Vir

OR670062.1__WQM42293.1__X__00004

Identity

Accession:
OR670062 ↗
Kingdom:
phage

Quality

96.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Escherichia_phage_SKA5

TaxID: 3093925

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-103
PDB
Domain cluster: representative
CATH (43)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.93 90.0 8.38e-01 100.0% 87.3%
1pbyA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.76 71.0 6.93e-01 100.0% 93.4%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.71 64.0 5.15e-01 99.0% 63.7%
3f6zB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.69 51.0 5.63e-01 95.0% 97.5%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.69 62.0 5.81e-01 97.0% 96.7%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 63.0 5.34e-01 100.0% 68.6%
5ee2A00 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.68 62.0 5.78e-01 100.0% 84.4%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.67 59.0 5.40e-01 97.0% 96.2%
2l5pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 60.0 4.95e-01 99.0% 65.1%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.65 59.0 5.33e-01 100.0% 97.8%
3v8uA03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.64 50.0 5.20e-01 99.0% 92.2%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 55.0 4.81e-01 100.0% 90.2%
5swiD01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.62 48.0 3.56e-01 82.0% 80.7%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 56.0 5.02e-01 100.0% 94.8%
4qq1C03 2.40.128.240 Mainly Beta › Beta Barrel › Lipocalin › 0.61 46.0 4.79e-01 98.0% 90.9%
1em2A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 52.0 4.07e-01 93.0% 79.0%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 54.0 5.00e-01 97.0% 100.0%
5kbzB00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.61 52.0 3.70e-01 96.0% 81.6%
4o4oA00 2.40.128.590 Mainly Beta › Beta Barrel › Lipocalin › CpcT/CpeT domain 0.60 54.0 4.34e-01 100.0% 97.0%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 41.0 3.39e-01 100.0% 38.3%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.59 51.0 4.47e-01 100.0% 83.3%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 49.0 3.99e-01 90.0% 61.6%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.59 51.0 4.49e-01 100.0% 83.4%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.59 51.0 4.74e-01 98.0% 97.7%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 48.0 4.17e-01 89.0% 94.7%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 49.0 3.49e-01 96.0% 92.1%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 46.0 3.11e-01 89.0% 65.0%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.55 45.0 2.78e-01 88.0% 62.3%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.55 43.0 4.31e-01 97.0% 80.8%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 32.0 3.72e-01 85.0% 83.1%
5o16B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.54 46.0 3.45e-01 96.0% 81.6%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.54 48.0 4.39e-01 100.0% 77.9%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 36.0 3.75e-01 74.0% 74.5%
1dmlA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 43.0 3.22e-01 91.0% 84.6%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.52 42.0 3.21e-01 90.0% 43.1%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.52 46.0 3.39e-01 98.0% 83.0%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 45.0 3.79e-01 98.0% 70.2%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.51 36.0 3.69e-01 74.0% 87.1%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.51 42.0 3.95e-01 90.0% 94.3%
1ospO02 3.90.930.1 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.51 42.0 3.78e-01 97.0% 63.7%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.51 41.0 3.68e-01 92.0% 78.8%
4ba0A01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.50 43.0 3.44e-01 94.0% 97.0%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 42.0 3.52e-01 91.0% 71.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
164541 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.93 90.0 8.38e-01 100.0% 87.3%
5033471 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.80 76.0 7.53e-01 100.0% 98.1%
857 9.3.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Qn_am_d_aII 0.76 71.0 6.88e-01 100.0% 91.7%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.74 66.0 6.62e-01 100.0% 96.0%
3977969 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.73 68.0 6.57e-01 100.0% 90.0%
1117891 9.2.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.69 62.0 5.80e-01 97.0% 95.1%
4942135 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.68 62.0 5.73e-01 98.0% 98.4%
3714422 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.67 60.0 4.57e-01 100.0% 82.6%
3963279 5084.5.1.2 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.65 56.0 3.93e-01 93.0% 96.5%
3763936 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.65 60.0 5.08e-01 100.0% 67.5%
5037122 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.65 59.0 4.72e-01 100.0% 87.7%
4960625 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.64 56.0 4.65e-01 99.0% 92.4%
3501545 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.63 56.0 4.71e-01 97.0% 64.7%
1952891 9.1.1.9 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.63 53.0 4.81e-01 93.0% 96.3%
5017958 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 56.0 4.88e-01 100.0% 77.3%
3386238 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 56.0 3.90e-01 100.0% 80.9%
3754415 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.61 55.0 4.72e-01 100.0% 67.1%
5043414 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.61 54.0 4.91e-01 100.0% 97.0%
3638937 220.1.1.195 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_fung_RdRP 0.60 44.0 3.69e-01 77.0% 95.3%
4354418 9.1.1.16 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 51.0 3.14e-01 100.0% 21.1%
3882660 12.3.1.13 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_38C 0.57 45.0 3.23e-01 86.0% 92.5%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.54 43.0 4.49e-01 96.0% 100.0%
4445317 9.1.1.1 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.54 46.0 3.97e-01 93.0% 67.7%
3596915 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.54 45.0 2.84e-01 93.0% 34.6%
4027822 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 44.0 3.44e-01 87.0% 58.6%
None — 0.54 44.0 2.78e-01 90.0% 78.2%
3219546 220.1.1.4 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.53 43.0 3.82e-01 100.0% 59.3%
3783443 109.2.1.70 ↗ alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_92, Glyco_hydro_92N 0.52 47.0 2.83e-01 100.0% 92.6%
3707133 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.52 44.0 3.51e-01 95.0% 91.9%
4259150 295.1.1.46 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › WapI 0.51 44.0 4.07e-01 98.0% 97.0%
3190914 12.3.1.12 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_transf_36 0.50 40.0 2.85e-01 86.0% 86.1%