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OR670591.1__WPF64953.1__FBHYGVHD_CDS0106__00106

Bact-Vir

OR670591.1__WPF64953.1__FBHYGVHD_CDS0106__00106

Identity

Accession:
OR670591 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ehrlichviridae› Chennaivirus› Staphylococcus_phage_MVC_VPHSA1

TaxID: 3088876

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-66
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.65 48.0 4.01e-01 98.4% 44.2%
3kk4A01 1.10.3990.20 Mainly Alpha › Orthogonal Bundle › Ribbon-helix-helix fold › protein bp1543 0.64 52.0 4.38e-01 91.9% 61.5%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.61 49.0 3.41e-01 93.5% 38.2%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.59 42.0 3.82e-01 75.8% 65.1%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.58 41.0 3.69e-01 77.4% 61.5%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 44.0 3.75e-01 93.5% 75.8%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.57 35.0 3.45e-01 82.3% 56.9%
4ic1D00 3.90.320.10 Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › 0.57 44.0 3.05e-01 83.9% 51.9%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 37.0 3.16e-01 90.3% 40.2%
1wmhB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 37.0 3.41e-01 72.6% 51.2%
4fybA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 46.0 3.51e-01 98.4% 80.7%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.54 43.0 3.47e-01 93.5% 60.3%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 38.0 2.81e-01 82.3% 28.6%
1nkiA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.53 38.0 3.04e-01 77.4% 77.6%
6tmfI00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.53 40.0 2.94e-01 88.7% 86.4%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.53 40.0 2.60e-01 85.5% 68.0%
4mtlA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 38.0 2.79e-01 80.6% 93.8%
2cs4A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.30e-01 75.8% 86.3%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 38.0 4.06e-01 88.7% 92.3%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.52 35.0 3.14e-01 71.0% 94.8%
3dmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 37.0 2.74e-01 79.0% 95.4%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 35.0 3.95e-01 82.3% 100.0%
3w4sA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 43.0 2.91e-01 100.0% 22.3%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.71e-01 72.6% 86.6%
8gq6C01 3.30.230.130 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Cullin; Chain C, Domain 2 0.50 40.0 3.03e-01 88.7% 85.5%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 42.0 3.38e-01 98.4% 51.9%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965386 2.4.1.6 ↗ beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.71 48.0 3.85e-01 93.5% 37.3%
4293536 4232.1.1.0 ↗ few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 0.64 38.0 4.15e-01 87.1% 74.0%
4259684 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.63 48.0 4.03e-01 83.9% 63.6%
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.62 38.0 4.32e-01 79.0% 86.7%
3946755 605.1.1.26 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF2058 0.60 44.0 3.66e-01 79.0% 49.6%
4997744 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 45.0 3.77e-01 83.9% 57.4%
3813831 226.1.1.16 ↗ a+b two layers › POZ domain › POZ domain › POZ domain › Auxin_inducible 0.59 50.0 4.51e-01 95.2% 81.2%
3973207 7523.1.1.15 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate 0.59 37.0 3.08e-01 74.2% 36.4%
5008107 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.58 29.0 2.46e-01 80.6% 28.6%
3275839 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.56 37.0 3.31e-01 80.6% 45.3%
5055312 221.1.3.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Sulfite oxidase, middle catalytic domain 0.55 40.0 2.99e-01 77.4% 69.0%
429187 330.9.1.1 ↗ a+b two layers › dsRBD-like › C-terminal domain in LINE-1 ORF1p › C-terminal domain in LINE-1 ORF1p › Tnp_22_dsRBD 0.55 39.0 3.67e-01 95.2% 61.0%
3511886 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 45.0 3.58e-01 98.4% 84.1%
3484326 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.54 41.0 2.75e-01 88.7% 89.0%
2095478 3146.1.1.1 ↗ a+b complex topology › gH main domain › gH main domain › gH main domain › Herpes_glycop_H 0.54 41.0 2.44e-01 85.5% 43.4%
3243593 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.53 38.0 3.24e-01 77.4% 66.7%
3902875 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 35.0 3.49e-01 80.6% 64.6%
3793671 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.52 34.0 3.14e-01 75.8% 48.2%
3627479 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.52 34.0 2.79e-01 75.8% 32.8%
5002836 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.52 39.0 2.52e-01 85.5% 66.9%
3482807 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.51 39.0 3.38e-01 88.7% 88.0%
3619962 221.1.1.4 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.51 35.0 3.20e-01 74.2% 52.9%
4934074 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.50 41.0 3.51e-01 98.4% 53.6%