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OR670591.1__WPF64954.1__FBHYGVHD_CDS0107__00107

Bact-Vir

OR670591.1__WPF64954.1__FBHYGVHD_CDS0107__00107

Identity

Accession:
OR670591 ↗
Kingdom:
phage

Quality

71.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ehrlichviridae› Chennaivirus› Staphylococcus_phage_MVC_VPHSA1

TaxID: 3088876

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-68
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6e94A02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.89 58.0 5.32e-01 75.0% 53.6%
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.86 74.0 6.75e-01 95.5% 81.0%
1g2dC03 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.83 50.0 5.83e-01 70.5% 100.0%
1tf6D01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.80 56.0 6.19e-01 79.5% 100.0%
3uk3D02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.79 50.0 5.67e-01 70.5% 100.0%
4r2qA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.78 54.0 4.24e-01 75.0% 36.4%
5afuV00 2.160.10.10 Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins 0.73 50.0 3.35e-01 72.7% 53.3%
3zssA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.70 47.0 2.77e-01 70.5% 26.7%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.70 45.0 2.93e-01 97.7% 16.5%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.67 48.0 3.65e-01 77.3% 32.1%
2v25A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.66 51.0 3.65e-01 97.7% 29.2%
1hp1A01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.63 49.0 2.90e-01 100.0% 11.3%
1f32A01 3.30.1120.50 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Pepsin inhibitor-3 0.63 47.0 4.05e-01 100.0% 52.2%
1t3uA01 3.30.160.880 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Cell division protein ZapA protomer, N-terminal domain 0.62 44.0 4.48e-01 79.5% 90.7%
1kkmB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 52.0 3.52e-01 100.0% 76.8%
3mekA02 6.10.140.2220 Special › Helix non-globular › Helix Hairpins › 0.55 38.0 3.76e-01 77.3% 61.2%
6h9dA00 1.10.530.40 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.55 45.0 3.11e-01 90.9% 63.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060529 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.88 68.0 5.76e-01 84.1% 94.3%
4959767 375.1.3.3 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.84 57.0 5.11e-01 70.5% 100.0%
3792629 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.74 54.0 4.24e-01 81.8% 37.8%
4998676 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.69 48.0 3.04e-01 72.7% 19.5%
4935165 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.67 46.0 2.95e-01 72.7% 21.0%
3506095 167.1.1.1 ↗ alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 0.60 49.0 3.35e-01 88.6% 29.9%
4030489 109.4.1.3424 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF6831, DUF6832 0.60 47.0 2.95e-01 88.6% 26.2%
4996700 2485.1.1.38 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_3 0.60 49.0 3.98e-01 100.0% 88.4%
3936522 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 45.0 3.65e-01 93.2% 69.0%
4648957 101.1.9.2 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › SRP19 0.58 48.0 3.37e-01 93.2% 71.4%
3728141 2003.1.1.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › ADH_zinc_N 0.57 47.0 3.09e-01 93.2% 95.6%
3516032 2003.1.5.9 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NNMT_PNMT_TEMT 0.57 44.0 2.77e-01 84.1% 73.8%
3587633 4002.1.1.0 ↗ alpha bundles › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes › alpha-helical domain in dehydroquinate synthase-like enzymes 0.56 49.0 3.23e-01 97.7% 26.7%
None — 0.56 43.0 2.67e-01 84.1% 72.8%
3335720 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.55 39.0 3.20e-01 79.5% 61.1%
3596821 4268.2.1.0 ↗ alpha duplicates or obligate multimers › EspA/CesA-like › EspA chaperone CesA › EspA chaperone CesA 0.55 48.0 3.51e-01 100.0% 37.4%
5066457 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.53 44.0 3.93e-01 95.5% 84.6%
5059475 4961.1.1.0 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit 0.53 40.0 3.39e-01 88.6% 74.1%
3231491 4961.1.1.1 ↗ a+b complex topology › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › inserted a+b domain in yeast RNA polymerase beta subunit › RNA_pol_Rpb2_4 0.52 40.0 3.28e-01 93.2% 62.1%