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OR670592.1__WPF65036.1__YTCETSXE_CDS0080__00080

Bact-Vir

OR670592.1__WPF65036.1__YTCETSXE_CDS0080__00080

Identity

Accession:
OR670592 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 39-55_129-170
PDB
Domain cluster: representative
CATH (68)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.76 52.0 4.03e-01 71.2% 71.9%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.73 49.0 4.79e-01 71.2% 69.7%
3n8hA02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.72 39.0 3.56e-01 86.4% 40.8%
4fg9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.71 48.0 4.41e-01 71.2% 92.4%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.70 52.0 4.17e-01 84.7% 40.0%
3uqcB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 47.0 4.05e-01 71.2% 82.8%
3zh8C01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 49.0 3.92e-01 74.6% 80.0%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 52.0 5.13e-01 88.1% 77.8%
2r0cA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 54.0 3.53e-01 91.5% 49.4%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 50.0 3.92e-01 83.1% 57.9%
3gniB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 46.0 4.01e-01 74.6% 88.8%
3s95A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 46.0 4.02e-01 74.6% 84.1%
4c8bA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.65 44.0 2.82e-01 91.5% 15.1%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.64 48.0 4.43e-01 79.7% 81.6%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.64 49.0 3.72e-01 83.1% 37.1%
6k3lB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 47.0 4.06e-01 78.0% 82.4%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.67e-01 88.1% 74.2%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 53.0 3.31e-01 96.6% 38.8%
4euuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.63 42.0 3.74e-01 71.2% 85.4%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.63 47.0 4.54e-01 81.4% 71.6%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.68e-01 88.1% 79.0%
6rzqA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.62 41.0 3.71e-01 86.4% 48.2%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.62 55.0 4.07e-01 100.0% 86.4%
4gniA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.62 42.0 3.70e-01 86.4% 48.8%
4cy8A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 53.0 3.50e-01 98.3% 66.4%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 3.66e-01 74.6% 84.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.19e-01 79.7% 97.3%
1914A00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.60 52.0 3.81e-01 100.0% 46.2%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 53.0 3.17e-01 100.0% 35.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 46.0 4.18e-01 88.1% 79.3%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 39.0 4.30e-01 74.6% 88.9%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 44.0 4.40e-01 83.1% 79.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 44.0 4.37e-01 88.1% 77.8%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 50.0 3.72e-01 100.0% 89.8%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.59 45.0 4.29e-01 88.1% 75.7%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 51.0 3.09e-01 100.0% 40.5%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 40.0 3.07e-01 79.7% 29.1%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 48.0 4.02e-01 94.9% 77.1%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 49.0 3.33e-01 94.9% 62.7%
5cqfA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 3.02e-01 100.0% 40.3%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.58 42.0 4.28e-01 78.0% 91.1%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.57 51.0 3.25e-01 100.0% 67.9%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.57 44.0 2.83e-01 84.7% 56.5%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 40.0 2.75e-01 76.3% 77.7%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 46.0 3.30e-01 94.9% 29.3%
2ar5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 41.0 3.40e-01 81.4% 82.9%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 38.0 3.66e-01 72.9% 80.3%
1z87A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.76e-01 89.8% 73.0%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.56 41.0 3.26e-01 83.1% 67.1%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 4.17e-01 100.0% 86.7%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.55 45.0 3.20e-01 94.9% 84.3%
7ue1B01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 48.0 3.62e-01 98.3% 73.6%
1dlcA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.55 44.0 3.17e-01 94.9% 86.3%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.54 45.0 4.25e-01 98.3% 96.1%
1gm5A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.73e-01 93.2% 86.3%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 40.0 3.85e-01 86.4% 71.4%
3kksB00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 49.0 3.57e-01 100.0% 71.1%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.31e-01 76.3% 55.7%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 38.0 3.46e-01 72.9% 71.6%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.53 43.0 3.88e-01 91.5% 93.0%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.32e-01 83.1% 80.2%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 3.25e-01 89.8% 82.4%
4ge6A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.53 46.0 2.92e-01 98.3% 67.0%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.52 47.0 3.13e-01 100.0% 78.8%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 38.0 3.43e-01 76.3% 62.8%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.25e-01 71.2% 93.2%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.52 41.0 2.60e-01 94.9% 54.6%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.50 41.0 2.90e-01 96.6% 88.9%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3821886 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.83 37.0 3.37e-01 71.2% 34.7%
5021275 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 65.0 5.36e-01 94.9% 79.1%
3242234 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.74 51.0 2.93e-01 71.2% 15.6%
3797649 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 37.0 2.92e-01 78.0% 26.4%
4587696 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.70 56.0 4.76e-01 89.8% 57.0%
4457428 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.68 51.0 4.24e-01 83.1% 61.8%
4515154 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.68 51.0 4.18e-01 83.1% 49.6%
4334562 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.67 54.0 4.23e-01 89.8% 44.6%
4253165 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.67 57.0 4.38e-01 96.6% 46.4%
4497599 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.67 50.0 4.24e-01 83.1% 54.3%
4325086 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.67 51.0 4.25e-01 83.1% 47.6%
4426764 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.67 51.0 4.23e-01 83.1% 47.6%
4936051 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.03e-01 89.8% 87.3%
4329624 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.66 50.0 4.18e-01 83.1% 54.3%
5001282 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.66 43.0 3.17e-01 86.4% 27.6%
3417528 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.66 45.0 2.83e-01 71.2% 25.0%
4123140 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.66 49.0 4.10e-01 83.1% 49.1%
4104219 4.1.1.57 beta barrels › SH3 › SH3 › SH3 › EFP_N 0.65 50.0 4.93e-01 88.1% 76.9%
4436471 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.65 50.0 4.14e-01 83.1% 47.6%
5026289 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.65 49.0 3.85e-01 83.1% 38.4%
5021205 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 49.0 3.87e-01 83.1% 50.0%
5035742 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.78e-01 94.9% 80.0%
5017342 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 51.0 3.98e-01 88.1% 43.7%
421 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.65 48.0 4.41e-01 79.7% 67.5%
5028078 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.65 52.0 3.35e-01 89.8% 53.6%
3839111 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 49.0 4.30e-01 83.1% 55.6%
3930705 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.65 51.0 4.31e-01 86.4% 56.0%
3234647 69.1.2.1 beta complex topology › Hedgehog/intein › Hedgehog/intein › AXH › AXH 0.65 47.0 3.88e-01 88.1% 41.2%
4086268 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.65 49.0 4.29e-01 83.1% 63.3%
4311788 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.64 48.0 3.94e-01 83.1% 49.6%
4939572 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 57.0 3.33e-01 100.0% 67.5%
3500755 304.55.1.14 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Y2_Tnp 0.64 50.0 3.53e-01 89.8% 77.6%
4268790 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.64 48.0 3.79e-01 83.1% 44.6%
3287903 802.1.1.1 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.64 47.0 5.01e-01 83.1% 94.0%
4057742 2.4.1.11 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.64 50.0 4.92e-01 88.1% 87.7%
4039860 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.64 48.0 3.94e-01 83.1% 50.0%
4001056 220.1.1.5 beta barrels › PH domain-like › PH domain-like › PH domain-like › PID 0.63 49.0 4.23e-01 88.1% 80.0%
4187163 2.4.1.12 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.63 49.0 4.03e-01 88.1% 49.6%
5071787 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 47.0 3.69e-01 83.1% 43.1%
4935198 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.62 53.0 3.88e-01 96.6% 43.8%
4486857 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.61 44.0 3.33e-01 74.6% 72.6%
5076347 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.61 52.0 4.67e-01 96.6% 72.9%
3929330 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.60 47.0 3.74e-01 89.8% 63.1%
4027507 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.60 44.0 3.58e-01 81.4% 80.8%
3718921 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 46.0 2.90e-01 84.7% 96.8%
3706905 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 44.0 4.05e-01 84.7% 90.6%
4948812 2003.1.2.297 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_dim 0.59 50.0 3.06e-01 100.0% 23.6%
3178803 896.1.1.3 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › SRP9-21 0.59 49.0 4.44e-01 100.0% 95.3%
4216530 4263.2.1.0 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain 0.58 46.0 4.32e-01 89.8% 82.7%
4964086 2004.1.1.1218 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PilB3_C 0.58 46.0 2.70e-01 86.4% 46.8%
5041307 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 44.0 2.96e-01 86.4% 26.5%
3479408 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 46.0 3.41e-01 94.9% 47.2%
3947062 2484.1.1.194 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve, rve_3 0.57 43.0 2.96e-01 79.7% 81.5%
3646441 2484.1.1.205 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.56 40.0 3.39e-01 78.0% 68.2%
2426852 316.1.1.36 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central 0.56 43.0 3.13e-01 83.1% 78.8%
2892779 206.1.1.71 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.56 43.0 2.82e-01 84.7% 41.6%
4951444 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.56 41.0 3.16e-01 81.4% 48.0%
3670182 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.56 45.0 3.57e-01 89.8% 52.8%
4937410 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.55 40.0 3.35e-01 76.3% 56.8%
4027440 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.54 40.0 3.26e-01 79.7% 70.9%
3783181 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 40.0 3.23e-01 79.7% 75.5%
4024735 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.53 38.0 3.65e-01 78.0% 71.4%
3177460 3270.1.1.0 a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.53 43.0 3.66e-01 91.5% 79.0%
3412668 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 38.0 3.14e-01 78.0% 47.5%
3436093 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 39.0 3.60e-01 78.0% 65.3%
3655368 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.53 39.0 3.60e-01 78.0% 65.3%
402817 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.53 37.0 3.21e-01 78.0% 75.5%
146717 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.52 36.0 3.15e-01 74.6% 54.1%
4025256 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 36.0 3.39e-01 76.3% 57.5%
3705090 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 37.0 3.21e-01 79.7% 97.0%
3262159 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.51 37.0 3.01e-01 81.4% 66.2%
4350350 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.51 43.0 3.29e-01 96.6% 73.8%
2575628 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.51 43.0 3.20e-01 93.2% 97.4%
3611339 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 35.0 3.17e-01 72.9% 58.8%
3911301 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.50 34.0 3.19e-01 74.6% 60.0%
4135922 2484.1.1.48 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MutS_II 0.50 42.0 3.13e-01 94.9% 69.4%
D2 medium residues 56-128
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.69 40.0 4.85e-01 90.4% 93.3%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.66 48.0 3.15e-01 100.0% 18.6%
3w3sA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.62 47.0 3.02e-01 82.2% 84.4%
7bqiA01 1.20.58.900 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RUN domain 0.62 40.0 3.15e-01 71.2% 31.8%
3qnmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 45.0 4.20e-01 98.6% 71.1%
3tndA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.54 40.0 3.32e-01 80.8% 81.8%
7kz9A02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.53 44.0 3.33e-01 98.6% 98.6%
3wtcA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 45.0 3.02e-01 91.8% 51.0%
1eblA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 42.0 3.37e-01 87.7% 80.3%
1v1aA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.52 40.0 2.71e-01 84.9% 89.4%
2jpfA01 1.20.58.960 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Protein of unknown function (DUF3120) 0.52 40.0 3.84e-01 86.3% 81.6%
3h78A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.52 41.0 3.25e-01 87.7% 80.6%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 42.0 4.17e-01 100.0% 89.3%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.51 45.0 3.46e-01 100.0% 83.4%
2iruA02 3.30.70.3300 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 44.0 3.60e-01 100.0% 58.7%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3724262 7549.1.1.1 a/b three-layered sandwiches › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine_A 0.72 51.0 3.27e-01 100.0% 17.1%
3608416 4336.2.1.0 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 0.71 48.0 4.61e-01 95.9% 61.2%
4013465 7549.1.1.0 a/b three-layered sandwiches › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) 0.70 50.0 3.22e-01 100.0% 17.1%
4132742 7549.1.1.1 a/b three-layered sandwiches › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine synthase A-like (Pfam 04227) › Indigoidine_A 0.69 49.0 3.22e-01 100.0% 18.3%
3645596 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.65 45.0 2.69e-01 80.8% 9.2%
4088535 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.64 49.0 3.75e-01 84.9% 36.4%
4337032 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.63 46.0 3.78e-01 83.6% 42.9%
4328219 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.62 47.0 3.85e-01 84.9% 44.4%
3412555 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.61 42.0 3.70e-01 72.6% 50.9%
4189329 6026.1.1.36 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › AlaE 0.61 47.0 3.89e-01 83.6% 80.0%
3823849 10.12.1.101 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC, Cupin_8 0.61 52.0 3.38e-01 97.3% 54.1%
4635506 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.60 44.0 3.59e-01 83.6% 40.7%
3374942 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.60 42.0 2.53e-01 74.0% 20.2%
3289545 150.8.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE 0.59 41.0 3.04e-01 71.2% 51.1%
4120017 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.58 44.0 3.55e-01 83.6% 42.1%
3320698 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.56 37.0 2.19e-01 90.4% 7.7%
3592189 109.4.1.1329 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › NatB_MDM20, PF31234 0.56 45.0 2.56e-01 90.4% 10.7%
3336604 109.4.1.1383 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.55 38.0 2.25e-01 89.0% 8.3%
3924277 109.54.1.0 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 0.53 44.0 2.54e-01 93.2% 17.3%
3351960 109.4.1.2979 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.53 43.0 2.52e-01 87.7% 11.7%
4336622 7523.1.1.45 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Lipoprotein_X 0.52 46.0 3.05e-01 95.9% 51.6%
3371469 109.4.1.3022 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.52 43.0 2.51e-01 89.0% 11.9%
3420651 109.4.1.1521 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, DYW_deaminase, Eplus_motif, E_motif 0.52 42.0 2.72e-01 87.7% 21.5%
3490529 109.4.1.2013 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF31013 0.52 40.0 3.11e-01 89.0% 37.2%
3321410 109.4.1.2586 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, Eplus_motif, E_motif 0.52 42.0 2.48e-01 89.0% 11.6%
3452954 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.52 42.0 2.50e-01 89.0% 12.3%
None 0.52 42.0 3.47e-01 89.0% 55.6%
3646564 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.52 39.0 2.36e-01 89.0% 10.9%
3669284 109.4.1.1738 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.51 41.0 2.41e-01 87.7% 11.3%
3808573 109.4.1.3485 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, DYW_deaminase, Eplus_motif, E_motif 0.51 41.0 2.59e-01 89.0% 17.8%
3807308 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.51 42.0 2.44e-01 90.4% 12.5%
3677917 109.3.1.320 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › DYW_deaminase 0.51 42.0 3.42e-01 90.4% 63.0%
3676373 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.51 41.0 2.45e-01 89.0% 12.8%
3826384 109.4.1.1285 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.51 41.0 2.57e-01 89.0% 17.8%
3306319 109.4.1.1383 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, Eplus_motif, E_motif 0.51 41.0 2.45e-01 89.0% 13.2%
3354291 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.51 41.0 2.75e-01 90.4% 27.5%
3346510 109.4.1.1291 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.50 41.0 2.46e-01 90.4% 14.4%
3807903 109.4.1.2208 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif, TPR_24 0.50 41.0 2.42e-01 89.0% 12.0%
3830691 109.4.1.2337 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif, TPR_24 0.50 41.0 2.47e-01 90.4% 15.8%
3998700 3998.1.1.1 alpha arrays › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Peptidase inhibitors family I29 › Inhibitor_I29 0.50 42.0 4.13e-01 91.8% 82.5%
3663499 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.50 41.0 2.43e-01 90.4% 12.8%
3682973 109.4.1.2641 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR_2, DYW_deaminase, Eplus_motif 0.50 41.0 2.69e-01 89.0% 22.8%
3317967 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.50 40.0 2.37e-01 89.0% 11.1%
None 0.50 41.0 3.36e-01 90.4% 61.6%
3821185 109.4.1.1476 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2, DYW_deaminase, E_motif 0.50 41.0 2.40e-01 90.4% 13.0%
3671030 109.4.1.1267 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif 0.50 41.0 2.43e-01 90.4% 14.4%