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OR714918.1__WPZ98921.1__vBPA16b_036__00036

Bact-Vir

OR714918.1__WPZ98921.1__vBPA16b_036__00036

Identity

Accession:
OR714918 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Septimatrevirus› Pseudomonas_phage_vB_PaeS_PA16b

TaxID: 3097491

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-93
PDB
Domain cluster: rep: IMGVR_UViG_3300019487_000071-3300019487-Ga0187893_1000332566__D8-103
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00472.27 best RF-1 49.1 7.00e-13 88.2% 57.8%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gqeA03 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.87 65.0 6.87e-01 76.3% 90.4%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.80 42.0 4.96e-01 73.1% 72.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.77 54.0 6.05e-01 73.1% 94.4%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.75 54.0 5.03e-01 75.3% 61.7%
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 44.0 3.72e-01 72.0% 94.1%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.61 42.0 3.47e-01 73.1% 86.0%
3ly7A01 3.40.50.11830 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 41.0 3.47e-01 73.1% 53.4%
3drnB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 39.0 3.42e-01 73.1% 61.3%
4hadB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 33.0 2.67e-01 75.3% 28.7%
3nynB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 42.0 3.18e-01 91.4% 64.3%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 32.0 3.03e-01 87.1% 52.2%
4nwyA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 43.0 3.94e-01 95.7% 88.3%
3pihA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.50 30.0 3.32e-01 72.0% 75.0%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3753952 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.92 66.0 5.87e-01 74.2% 56.0%
3591242 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.91 66.0 5.86e-01 74.2% 64.0%
4015067 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.90 64.0 5.80e-01 73.1% 57.5%
3966973 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.90 69.0 6.85e-01 78.5% 82.1%
3635007 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.90 65.0 5.75e-01 74.2% 56.0%
3372819 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.89 65.0 6.50e-01 75.3% 76.8%
3785552 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.89 64.0 5.44e-01 74.2% 50.7%
3219930 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.88 63.0 5.64e-01 74.2% 68.8%
4809148 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.88 62.0 7.05e-01 73.1% 95.8%
3820953 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.87 65.0 6.62e-01 76.3% 84.4%
3605915 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.87 64.0 6.77e-01 76.3% 88.2%
3649935 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.84 61.0 6.26e-01 75.3% 78.9%
4665955 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.83 68.0 7.19e-01 94.6% 92.9%
5015133 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.83 45.0 5.59e-01 71.0% 85.0%
3661468 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.81 68.0 6.80e-01 94.6% 85.3%
4969162 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.81 45.0 5.56e-01 73.1% 86.7%
3708684 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.81 66.0 6.91e-01 94.6% 92.9%
3178493 330.3.1.1 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › RF-1 0.79 67.0 6.54e-01 95.7% 83.0%
3598137 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.76 64.0 6.76e-01 94.6% 96.5%
3934686 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.72 51.0 5.09e-01 73.1% 72.6%
4043415 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 50.0 3.14e-01 73.1% 15.7%
3949260 4120.1.1.0 ↗ few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP 0.65 37.0 3.57e-01 73.1% 47.3%
5051142 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 41.0 3.52e-01 71.0% 40.7%
4342450 880.1.1.1 ↗ a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind 0.62 43.0 2.73e-01 73.1% 56.1%
5001213 512.1.1.0 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.62 44.0 3.39e-01 75.3% 36.7%
3594042 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 38.0 2.85e-01 73.1% 25.3%
3933413 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.58 41.0 3.32e-01 73.1% 88.6%
3617779 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 41.0 3.31e-01 77.4% 91.6%
5074243 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 40.0 4.04e-01 77.4% 80.0%
3242790 206.1.3.3 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › PPDK_N 0.55 38.0 2.72e-01 72.0% 54.9%
4823230 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.53 36.0 3.85e-01 86.0% 80.2%
3177446 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.52 37.0 2.49e-01 73.1% 30.7%
5011976 2003.1.9.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.52 36.0 2.53e-01 72.0% 64.9%
3206928 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 36.0 2.46e-01 73.1% 28.5%
925 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 32.0 3.03e-01 87.1% 52.2%
D2 medium residues 102-163
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bjiA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.58 41.0 3.13e-01 75.8% 69.4%
1nnhA00 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 45.0 2.93e-01 98.4% 76.5%
2w9hA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.50 35.0 2.73e-01 74.2% 51.6%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3304389 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 49.0 3.11e-01 93.5% 37.7%
5033653 2007.2.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.56 45.0 3.61e-01 90.3% 91.2%
5053019 7531.1.1.1 ↗ a/b three-layered sandwiches › Carbamate kinase-like › Carbamate kinase-like › Carbamate kinase-like › AA_kinase 0.54 39.0 2.73e-01 80.6% 78.3%
4408862 2007.2.5.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.50 34.0 3.05e-01 72.6% 71.0%