Back to structures

WPH59252.1

Arc-Vir

OR762182__WPH59252.1__AFNJKBDN-CDS0035__00035

Identity

Accession:
OR762182 ↗
Protein ID:
WPH59252.1 ↗
Kingdom:
archaea

Quality

64.5 mean pLDDT

Taxonomy

TaxID: 3093958

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-57
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ayjA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.76 53.0 3.13e-01 100.0% 9.8%
3l8kA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 48.0 3.59e-01 100.0% 28.2%
1reoA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.72 47.0 3.35e-01 100.0% 23.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 46.0 4.36e-01 100.0% 54.8%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 48.0 4.39e-01 96.1% 53.0%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 51.0 4.37e-01 100.0% 50.0%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 51.0 5.28e-01 100.0% 85.7%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.64 47.0 3.38e-01 100.0% 28.8%
2y1sA00 2.30.60.10 Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N 0.63 44.0 3.50e-01 92.2% 35.2%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.62 44.0 3.30e-01 100.0% 29.5%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 43.0 4.03e-01 100.0% 57.6%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.62 47.0 4.22e-01 100.0% 59.2%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 44.0 3.77e-01 100.0% 46.5%
5w8mA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.61 43.0 2.87e-01 88.2% 19.4%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 47.0 4.33e-01 100.0% 65.7%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 45.0 3.66e-01 100.0% 42.2%
3hwuA00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.59 45.0 3.25e-01 100.0% 29.2%
1xdiA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 40.0 2.66e-01 100.0% 16.5%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.59 39.0 3.62e-01 86.3% 52.2%
2wbfX00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 45.0 2.94e-01 90.2% 87.2%
1mpyA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.58 37.0 2.78e-01 86.3% 22.1%
3p9dA03 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.57 42.0 2.98e-01 80.4% 88.2%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.57 50.0 3.44e-01 98.0% 35.1%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 37.0 2.96e-01 84.3% 34.0%
2wweA01 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.57 50.0 3.97e-01 100.0% 90.4%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.57 49.0 3.86e-01 100.0% 71.9%
4fxdA05 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.56 37.0 2.89e-01 88.2% 30.8%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 45.0 2.91e-01 90.2% 68.6%
4f3nA00 3.40.50.12710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 43.0 2.61e-01 90.2% 44.7%
2k4rA00 2.40.20.10 Mainly Beta › Beta Barrel › Plasminogen Kringle 4 › Plasminogen Kringle 4 0.54 45.0 3.95e-01 94.1% 76.6%
6hoxA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 2.59e-01 78.4% 67.2%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.54 46.0 3.70e-01 100.0% 51.9%
2zyqA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.54 36.0 2.78e-01 86.3% 26.5%
5mteA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 47.0 3.46e-01 100.0% 46.0%
3cetB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 3.29e-01 100.0% 40.9%
2d42A02 3.10.450.380 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 4.23e-01 100.0% 78.5%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.53 36.0 3.23e-01 84.3% 48.7%
3u04A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.53 47.0 3.22e-01 100.0% 36.6%
7x4pA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 38.0 2.76e-01 92.2% 25.5%
5v6fA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 42.0 3.15e-01 92.2% 95.6%
3e3uA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.51 44.0 3.01e-01 100.0% 34.7%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.51 42.0 3.87e-01 96.1% 73.9%
3f14A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.46e-01 100.0% 51.8%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 42.0 3.32e-01 100.0% 88.1%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.51 43.0 2.96e-01 100.0% 56.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 42.0 3.21e-01 100.0% 80.0%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.50 39.0 3.11e-01 94.1% 50.8%
3e0rA02 3.10.180.40 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › C3-degrading proteinase like domains 0.50 44.0 3.34e-01 98.0% 42.1%
2uurA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 37.0 2.65e-01 92.2% 84.8%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4309285 3844.2.1.2 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › DUF5081 0.80 56.0 3.77e-01 100.0% 20.5%
3494352 3991.1.1.2 alpha bundles › Rabin8 C-terminal domain › Rabin8 C-terminal domain › Rabin8 C-terminal domain › RAB3A-like_C 0.77 60.0 4.19e-01 100.0% 25.9%
5083204 3380.1.1.0 a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 0.76 54.0 5.48e-01 76.5% 78.0%
4407558 4232.1.1.1 few secondary structure elements › Ribosomal protein bL28-related › Ribosomal protein bL28-related › Ribosomal protein L28 › Ribosomal_L28 0.76 53.0 5.07e-01 74.5% 95.0%
3721277 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.71 49.0 3.01e-01 100.0% 12.0%
2445318 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.70 43.0 4.85e-01 88.2% 88.6%
5044389 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.70 50.0 5.07e-01 100.0% 78.0%
3970949 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.69 52.0 3.94e-01 100.0% 35.7%
4443040 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.66 53.0 4.13e-01 100.0% 42.3%
3188737 2007.1.1.12 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Shikimate_dh_N 0.65 50.0 3.92e-01 88.2% 94.2%
4900148 101.1.1.20 alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A 0.64 42.0 3.73e-01 90.2% 45.9%
5040718 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.62 55.0 4.75e-01 100.0% 96.2%
4031519 3425.1.1.1 a+b three layers › Two-component system yycF/yycG regulatory protein yycH-like › YycH N-terminal domain › YycH N-terminal domain › YycH 0.61 49.0 3.66e-01 94.1% 42.1%
4426276 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.21e-01 100.0% 60.0%
4127839 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.61 41.0 3.71e-01 100.0% 48.0%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 4.25e-01 100.0% 68.3%
4983389 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 47.0 4.37e-01 100.0% 67.7%
3226605 219.1.1.1 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C1 0.60 49.0 3.35e-01 94.1% 73.0%
4606688 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 46.0 4.09e-01 100.0% 58.7%
3164555 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 45.0 3.28e-01 100.0% 28.7%
4352306 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.59 51.0 4.09e-01 100.0% 50.5%
3822890 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.59 53.0 3.81e-01 100.0% 60.7%
None 0.59 43.0 2.61e-01 90.2% 12.1%
4941280 7000.1.1.0 alpha arrays › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS › inserted region in the C-terminal domain of the archeal LeuRS 0.59 45.0 3.29e-01 84.3% 40.0%
3964769 2008.1.1.78 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › RE_endonuc 0.58 50.0 3.46e-01 100.0% 51.1%
3658595 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.58 49.0 4.42e-01 98.0% 68.6%
3827585 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.58 52.0 4.06e-01 100.0% 81.0%
3672734 1.1.1.19 beta barrels › cradle loop barrel › RIFT-related › acid protease › Pol_BBD 0.58 49.0 3.85e-01 100.0% 44.3%
3468906 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 51.0 4.28e-01 100.0% 63.5%
4957983 11.1.4.23 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.57 46.0 3.59e-01 88.2% 75.5%
3811281 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 51.0 4.30e-01 100.0% 63.5%
3595983 3186.1.1.0 a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK 0.56 36.0 3.18e-01 84.3% 39.8%
4049072 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.56 43.0 3.44e-01 100.0% 40.0%
3619075 277.1.1.0 a+b two layers › PX domain › PX domain › PX domain 0.56 49.0 3.86e-01 100.0% 89.1%
5059830 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.56 48.0 3.99e-01 100.0% 54.4%
3607377 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.56 46.0 3.44e-01 100.0% 64.8%
4443803 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.56 42.0 2.80e-01 90.2% 99.2%
3934453 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.55 47.0 3.69e-01 100.0% 46.1%
3716892 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 45.0 3.55e-01 100.0% 40.7%
3287981 2.1.1.94 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.55 50.0 4.36e-01 100.0% 78.7%
3284813 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 44.0 3.88e-01 98.0% 60.0%
150055 2003.1.5.26 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.55 43.0 2.61e-01 90.2% 44.7%
3827936 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 47.0 3.83e-01 100.0% 72.0%
3933166 209.1.1.1 a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C 0.54 45.0 3.34e-01 98.0% 46.9%
5051502 324.1.1.1 a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC 0.54 44.0 3.16e-01 100.0% 31.4%
3275203 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.53 45.0 3.92e-01 100.0% 78.8%
3795541 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.01e-01 88.2% 36.7%
3383138 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 47.0 4.07e-01 100.0% 71.8%
4938877 2487.1.1.1 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cpn60_TCP1 0.53 41.0 2.98e-01 88.2% 92.9%
3942738 295.1.1.29 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › YjeJ 0.53 45.0 3.24e-01 100.0% 79.4%
140542 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.53 46.0 3.17e-01 100.0% 34.6%
3371023 3935.1.1.0 extended segments › 4E-BP2 › 4E-BP2 › 4E-BP2 0.53 33.0 3.75e-01 86.3% 100.0%
4290772 825.1.1.2 beta complex topology › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › Aerolysin family of pore-forming toxins › ETX_MTX2 0.52 44.0 2.83e-01 100.0% 73.3%
3507653 375.4.1.0 few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.52 38.0 2.88e-01 88.2% 56.4%
4995764 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 41.0 2.68e-01 90.2% 89.4%
4159666 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 41.0 3.29e-01 100.0% 44.0%
3183098 2003.1.2.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.51 44.0 2.66e-01 98.0% 44.3%
5000042 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.51 43.0 2.93e-01 100.0% 63.9%
3622516 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 36.0 2.90e-01 88.2% 36.7%
5062120 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 42.0 3.41e-01 100.0% 46.7%