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WPH59272.1

Arc-Vir

OR762182__WPH59272.1__AFNJKBDN-CDS0055__00055

Identity

Accession:
OR762182 ↗
Protein ID:
WPH59272.1 ↗
Kingdom:
archaea

Quality

93.2 mean pLDDT

Taxonomy

Halorubrum_virus_V_ICIS4

TaxID: 3093958

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-60
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09954.15 best DUF2188 37.1 3.90e-09 98.3% 100.0%
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mydA01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.68 46.0 3.52e-01 70.7% 98.6%
3vs8H00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.68 58.0 3.54e-01 100.0% 20.8%
1zatA02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.65 51.0 3.98e-01 84.5% 100.0%
3tx4A02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.65 55.0 4.16e-01 94.8% 99.3%
2mtzA02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.63 49.0 3.93e-01 86.2% 92.4%
4h0oA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 52.0 3.66e-01 98.3% 86.8%
3js6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 52.0 3.66e-01 98.3% 74.3%
3kxrA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.60 40.0 3.15e-01 100.0% 31.7%
1r0vA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.58 39.0 3.64e-01 100.0% 54.5%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.57 52.0 4.76e-01 100.0% 79.7%
4ruwA01 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.57 48.0 3.12e-01 96.6% 73.1%
3ocmB00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 38.0 2.88e-01 100.0% 27.4%
5zx8A00 3.40.50.1470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidyl-tRNA hydrolase 0.56 44.0 3.32e-01 96.6% 62.9%
8d3lA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.56 49.0 4.32e-01 100.0% 67.0%
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.56 49.0 4.57e-01 100.0% 78.7%
5tkwA02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.56 44.0 4.29e-01 96.6% 81.8%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.56 49.0 4.41e-01 100.0% 72.0%
3qj4A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 3.02e-01 93.1% 28.9%
3h09B02 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.55 46.0 2.74e-01 98.3% 19.4%
4phtY02 3.30.420.370 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › GspL cytoplasmic domain, C-terminal subdomain 0.55 43.0 4.26e-01 96.6% 83.9%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 3.26e-01 91.4% 35.5%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.45e-01 100.0% 51.0%
3au4A04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 42.0 3.66e-01 86.2% 68.8%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.73e-01 86.2% 78.8%
1zfjA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.53 45.0 2.67e-01 96.6% 30.3%
3kzhB00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.53 40.0 2.65e-01 100.0% 16.9%
4azzA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.53 44.0 3.34e-01 100.0% 54.5%
1rkuA02 3.90.1470.10 Alpha Beta › Alpha-Beta Complex › thrh gene product, domain 2 › thrh gene product, domain 2 0.52 43.0 3.70e-01 93.1% 89.5%
3lovA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 43.0 3.34e-01 100.0% 52.0%
7cr6D01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 45.0 4.08e-01 100.0% 73.2%
3hz4A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 36.0 2.96e-01 89.7% 36.7%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 44.0 3.70e-01 100.0% 81.7%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 44.0 3.71e-01 100.0% 78.4%
4a5pB01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.51 43.0 3.47e-01 100.0% 96.0%
3ivrA00 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.51 41.0 2.57e-01 96.6% 24.1%
4g1uD00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 38.0 2.57e-01 96.6% 19.5%
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 40.0 2.97e-01 91.4% 64.8%
4nsxA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.69e-01 93.1% 27.8%
2gumB01 2.30.30.1230 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.61e-01 100.0% 77.0%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.50 38.0 2.62e-01 84.5% 34.5%
2yzsA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.50 43.0 3.92e-01 100.0% 92.5%
6xwlE02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 33.0 2.62e-01 100.0% 28.5%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4665982 296.1.1.0 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 0.78 53.0 4.36e-01 70.7% 42.0%
3958912 296.1.1.0 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 0.76 51.0 4.24e-01 70.7% 42.0%
4022255 207.2.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like 0.76 67.0 4.09e-01 98.3% 26.7%
3231097 328.1.1.0 ↗ a+b two layers › IF3-like › AlbA-like › AlbA-like 0.74 66.0 4.97e-01 100.0% 89.3%
2722070 301.13.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › FakA-like_C 0.72 64.0 5.24e-01 100.0% 97.1%
4336618 301.13.1.3 ↗ a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain › FakA-like_C 0.71 63.0 5.16e-01 100.0% 96.3%
4826872 2010.1.1.4 ↗ a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › FakA-like_C 0.71 62.0 5.14e-01 100.0% 100.0%
3290970 2492.1.1.45 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26947 0.67 58.0 4.71e-01 100.0% 89.6%
3385541 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.66 45.0 2.82e-01 100.0% 14.1%
3236787 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.66 55.0 4.39e-01 100.0% 90.8%
5038438 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.65 57.0 4.49e-01 96.6% 62.6%
None — 0.65 46.0 2.78e-01 96.6% 11.9%
5080691 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.65 56.0 4.63e-01 100.0% 88.9%
3235525 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.64 53.0 3.77e-01 98.3% 58.0%
4634067 2484.1.1.60 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_E_G 0.64 56.0 4.28e-01 100.0% 55.6%
3837976 7570.1.1.1 ↗ a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › Mur_ligase_C 0.63 42.0 3.10e-01 91.4% 27.6%
3172493 242.3.1.1 ↗ a+b two layers › Homing endonucleases-like › DNA repair protein MutS, domain I › DNA repair protein MutS, domain I › MutS_I 0.63 54.0 4.36e-01 100.0% 74.2%
4063026 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.62 42.0 2.83e-01 93.1% 17.8%
3970105 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 51.0 4.72e-01 94.8% 72.0%
5082856 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.62 54.0 4.43e-01 96.6% 66.7%
3989835 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 54.0 4.22e-01 96.6% 94.2%
3386854 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 52.0 3.62e-01 98.3% 87.3%
5043309 3407.1.1.0 ↗ mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.61 50.0 4.41e-01 98.3% 74.7%
4971298 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.61 40.0 3.77e-01 100.0% 53.3%
3961091 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 51.0 4.12e-01 98.3% 87.5%
3818424 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.60 46.0 3.03e-01 93.1% 19.6%
3970163 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 50.0 4.68e-01 96.6% 76.0%
5075725 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.59 48.0 3.74e-01 96.6% 90.3%
4933934 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.59 54.0 3.31e-01 100.0% 18.2%
3575214 321.1.1.4 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GatB_N 0.59 42.0 2.92e-01 77.6% 47.0%
4969231 2007.1.14.6 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › CbiX 0.59 52.0 4.27e-01 100.0% 98.1%
4438458 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.59 53.0 3.25e-01 100.0% 20.9%
3731940 633.23.1.12 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.59 48.0 3.21e-01 94.8% 53.7%
4959628 282.1.1.1 ↗ a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS 0.58 39.0 2.99e-01 100.0% 29.6%
3388895 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.58 41.0 3.39e-01 100.0% 40.9%
4088587 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.58 52.0 3.24e-01 100.0% 19.0%
4947563 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.57 52.0 3.22e-01 100.0% 17.9%
4316823 296.1.1.3 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › PF26540 0.57 52.0 4.04e-01 100.0% 50.8%
4542362 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.57 51.0 3.17e-01 100.0% 17.4%
5037760 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.57 49.0 3.72e-01 100.0% 62.8%
2798015 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.56 50.0 3.08e-01 100.0% 16.3%
3683209 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.56 47.0 3.01e-01 96.6% 19.6%
2816212 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.56 49.0 3.09e-01 100.0% 17.3%
2985803 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.56 49.0 3.07e-01 100.0% 17.1%
4009309 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.56 43.0 3.96e-01 100.0% 63.5%
1140434 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.56 49.0 3.06e-01 100.0% 17.0%
4987025 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.56 45.0 3.00e-01 98.3% 91.9%
4495021 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.55 49.0 3.02e-01 100.0% 18.0%
1892334 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.55 44.0 3.98e-01 96.6% 63.2%
1412146 2484.1.1.47 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › T2SSL 0.55 42.0 3.86e-01 96.6% 62.5%
4996324 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.54 48.0 2.96e-01 100.0% 17.3%
5077504 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.54 48.0 2.97e-01 100.0% 18.3%
3958770 10.1.1.40 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Arabino_trans_N 0.54 46.0 4.05e-01 100.0% 95.6%
3604468 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 34.0 3.13e-01 74.1% 46.3%
4649506 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.53 48.0 3.01e-01 100.0% 18.7%
4934312 7601.1.1.0 ↗ a/b three-layered sandwiches › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain › Lactate racemase N-terminal domain 0.53 46.0 3.10e-01 96.6% 30.7%
3299531 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 47.0 2.94e-01 100.0% 51.8%
4046811 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.53 42.0 2.70e-01 87.9% 46.6%
3434425 2003.1.2.29 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.53 47.0 2.84e-01 100.0% 43.0%
5004081 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.53 46.0 2.91e-01 100.0% 18.1%
4041865 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.52 46.0 2.85e-01 100.0% 17.1%
4351616 220.1.1.10 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SSrecog 0.51 43.0 3.40e-01 93.1% 88.3%
1723569 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.51 44.0 2.84e-01 100.0% 20.7%