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OR777151.1__WPM94323.1__VB1_CDS0074__00074

Bact-Vir

OR777151.1__WPM94323.1__VB1_CDS0074__00074

Identity

Accession:
OR777151 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-33
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3iwaA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.76 61.0 3.91e-01 100.0% 19.1%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.75 61.0 4.17e-01 100.0% 31.0%
3e0jA01 3.60.21.50 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › 0.75 62.0 3.63e-01 100.0% 94.6%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.73 62.0 5.69e-01 100.0% 77.8%
1asuA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.73 58.0 3.84e-01 100.0% 21.6%
4s3nA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.72 58.0 3.85e-01 100.0% 75.5%
1s3lA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.71 55.0 3.62e-01 97.0% 100.0%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 58.0 3.37e-01 100.0% 16.9%
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.71 54.0 3.70e-01 100.0% 23.7%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.70 55.0 4.02e-01 100.0% 36.8%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 54.0 3.92e-01 100.0% 37.4%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.69 53.0 4.38e-01 100.0% 52.0%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 48.0 4.11e-01 100.0% 42.4%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 55.0 4.47e-01 100.0% 49.3%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 56.0 3.92e-01 100.0% 26.8%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.68 54.0 3.63e-01 97.0% 22.8%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.68 52.0 4.93e-01 97.0% 77.3%
7e52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 57.0 3.85e-01 100.0% 25.8%
2bklA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.67 51.0 2.98e-01 100.0% 9.5%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.67 57.0 3.80e-01 100.0% 42.1%
2dfjA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.67 55.0 3.28e-01 100.0% 100.0%
1tv8B00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.67 51.0 2.97e-01 100.0% 9.5%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 50.0 4.79e-01 100.0% 71.1%
2yvtA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.66 52.0 3.15e-01 100.0% 99.6%
3h5nD02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 55.0 3.27e-01 100.0% 35.0%
2i5bA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.65 50.0 3.02e-01 97.0% 11.5%
2qjcA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.65 52.0 3.20e-01 100.0% 93.2%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.65 52.0 3.66e-01 100.0% 27.4%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.64 49.0 4.12e-01 100.0% 52.9%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.64 47.0 2.66e-01 97.0% 6.5%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 52.0 4.22e-01 100.0% 55.1%
2qm0A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.63 49.0 3.02e-01 97.0% 30.0%
1e5tA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.62 51.0 2.96e-01 100.0% 13.9%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 3.96e-01 100.0% 43.8%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 3.50e-01 100.0% 38.0%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.62 45.0 3.88e-01 100.0% 53.5%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.61 47.0 4.44e-01 100.0% 75.0%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.61 44.0 3.14e-01 100.0% 24.8%
4hc5D00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 48.0 3.36e-01 100.0% 25.2%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.60 45.0 3.19e-01 90.9% 26.7%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 41.0 2.41e-01 100.0% 7.3%
1wq8A00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.57 47.0 3.45e-01 97.0% 52.5%
2xrcB03 3.10.250.10 Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain 0.57 42.0 3.15e-01 93.9% 93.4%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.56 42.0 3.20e-01 97.0% 45.2%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 2.97e-01 100.0% 26.5%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 40.0 3.12e-01 100.0% 34.3%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.54 40.0 2.73e-01 93.9% 23.5%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 38.0 3.46e-01 97.0% 51.7%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 42.0 3.93e-01 100.0% 66.0%
3rauA00 1.25.40.280 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › alix/aip1 like domains 0.52 38.0 2.27e-01 97.0% 27.1%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.23e-01 100.0% 48.4%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 41.0 3.25e-01 100.0% 42.9%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3710675 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.80 69.0 6.12e-01 100.0% 70.8%
5054449 375.1.1.7 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.78 66.0 5.26e-01 100.0% 49.3%
5062944 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 63.0 5.94e-01 100.0% 97.7%
4932673 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.77 66.0 4.83e-01 100.0% 40.0%
3169198 377.1.1.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.76 64.0 6.32e-01 100.0% 97.1%
3701501 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 63.0 5.18e-01 100.0% 56.9%
3544618 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.75 62.0 4.72e-01 100.0% 41.2%
5075670 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 62.0 5.80e-01 100.0% 76.7%
3517888 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.74 59.0 4.50e-01 100.0% 38.9%
3713064 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.74 56.0 5.76e-01 100.0% 100.0%
5077640 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 59.0 5.22e-01 100.0% 65.5%
4025648 2004.1.1.414 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 0.73 57.0 3.57e-01 97.0% 16.0%
3485727 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.73 58.0 4.33e-01 100.0% 41.1%
None 0.73 57.0 3.71e-01 100.0% 22.9%
4991994 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 58.0 5.13e-01 100.0% 69.1%
4929448 2484.1.1.107 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 0.72 57.0 3.85e-01 100.0% 26.2%
4991472 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.72 57.0 3.71e-01 100.0% 96.0%
3733718 4292.2.1.0 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.72 58.0 4.48e-01 100.0% 41.2%
4117020 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.71 56.0 4.75e-01 93.9% 51.7%
4443892 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.71 55.0 4.91e-01 97.0% 65.5%
3774525 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.71 56.0 3.59e-01 100.0% 21.7%
5027187 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.71 55.0 3.61e-01 100.0% 100.0%
5065631 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.71 57.0 4.75e-01 100.0% 60.0%
5030583 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.70 55.0 3.61e-01 97.0% 99.4%
4962274 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 56.0 5.19e-01 93.9% 73.3%
5049449 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 59.0 5.23e-01 100.0% 76.0%
5032977 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 56.0 4.42e-01 100.0% 43.8%
3383781 252.1.1.0 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD 0.69 55.0 4.92e-01 93.9% 66.0%
5040278 246.2.1.9 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 0.69 54.0 3.55e-01 97.0% 100.0%
3906610 220.1.1.170 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.69 55.0 3.74e-01 100.0% 24.3%
3820157 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.68 54.0 3.47e-01 100.0% 18.4%
4851967 4.1.1.32 beta barrels › SH3 › SH3 › SH3 › CarD_TRCF_RID 0.68 51.0 4.49e-01 100.0% 59.7%
3496489 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.68 48.0 4.48e-01 78.8% 71.1%
3903260 109.4.1.2707 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PH_21 0.68 55.0 3.09e-01 100.0% 7.7%
3593754 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 52.0 4.86e-01 93.9% 71.1%
5030311 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 49.0 4.43e-01 100.0% 56.4%
3392691 391.1.2.1 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC 0.66 50.0 3.46e-01 93.9% 25.6%
5030227 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.66 54.0 4.70e-01 100.0% 61.8%
3894798 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.64 51.0 4.82e-01 100.0% 73.3%
4928794 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 51.0 4.74e-01 97.0% 71.1%
3620947 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 52.0 4.55e-01 97.0% 63.6%
3211871 2008.1.1.31 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › VRR_NUC 0.63 49.0 3.04e-01 100.0% 62.4%
3902875 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 44.0 3.94e-01 100.0% 53.8%
3781161 4099.1.1.1 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD 0.60 49.0 3.39e-01 100.0% 30.4%
4587965 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.60 46.0 2.88e-01 100.0% 16.2%
3205488 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.60 50.0 3.07e-01 100.0% 14.5%
3642524 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.60 51.0 3.52e-01 100.0% 26.4%
3268682 2002.1.1.73 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TGT 0.59 44.0 2.73e-01 97.0% 12.2%
2771551 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.59 42.0 4.28e-01 100.0% 94.1%
4932517 3414.1.1.0 beta sandwiches › A putative surface protein › A putative surface protein › A putative surface protein 0.58 43.0 3.44e-01 100.0% 40.0%
4953226 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 45.0 3.88e-01 97.0% 55.4%
3962565 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 41.0 3.29e-01 100.0% 39.0%
3201592 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 46.0 2.90e-01 100.0% 15.0%