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OR836606.1__WRM43403.1__X__00072

Bact-Vir

OR836606.1__WRM43403.1__X__00072

Identity

Accession:
OR836606 ↗
Kingdom:
phage

Quality

92.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-118
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF03989.19 best DNA_gyraseA_C 13.3 6.30e-02 41.5% 50.0%
PF03989.19 DNA_gyraseA_C 20.8 2.90e-04 27.1% 58.3%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uc1A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.87 82.0 5.85e-01 98.3% 46.7%
3l6vA00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.86 80.0 5.67e-01 98.3% 47.0%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.85 80.0 5.63e-01 99.2% 44.4%
3no0A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.78 71.0 5.26e-01 100.0% 41.3%
1suuA00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.77 70.0 5.14e-01 97.5% 55.3%
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 38.0 4.34e-01 90.7% 85.1%
4h8wC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 35.0 4.28e-01 85.6% 89.3%
3dlqR02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 4.27e-01 92.4% 80.0%
3mb5A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.58 28.0 3.58e-01 78.8% 82.3%
1a21B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 4.34e-01 92.4% 84.7%
7y8sB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 4.09e-01 85.6% 86.9%
3l5iA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 4.05e-01 84.7% 85.2%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 24.0 2.91e-01 83.1% 58.3%
4xvhA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 40.0 4.15e-01 95.8% 81.3%
1lwrA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 3.94e-01 88.1% 80.2%
5eh1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 36.0 3.98e-01 85.6% 83.2%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 41.0 4.23e-01 94.9% 86.2%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 30.0 3.80e-01 72.0% 100.0%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 3.12e-01 100.0% 55.5%
4pytA02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.51 37.0 3.61e-01 92.4% 70.3%
6v77B02 3.90.850.10 Alpha Beta › Alpha-Beta Complex › Fumarylacetoacetate hydrolase; domain 2 › Fumarylacetoacetase-like, C-terminal domain 0.50 43.0 3.59e-01 94.9% 77.1%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.50 44.0 3.04e-01 98.3% 46.8%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3445642 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.90 85.0 5.86e-01 99.2% 42.6%
4388717 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.89 85.0 5.98e-01 99.2% 46.7%
4261933 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.89 85.0 5.96e-01 99.2% 45.9%
4429482 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.89 85.0 5.88e-01 99.2% 44.8%
4569696 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.89 85.0 5.99e-01 100.0% 37.8%
4186650 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.89 85.0 5.98e-01 100.0% 47.1%
4946214 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.88 83.0 5.82e-01 99.2% 60.3%
4602375 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.88 84.0 5.73e-01 99.2% 42.3%
4074611 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.88 84.0 5.93e-01 100.0% 47.5%
5053478 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.88 83.0 5.87e-01 99.2% 46.7%
4271590 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.87 83.0 5.80e-01 99.2% 46.3%
4102294 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.87 83.0 5.82e-01 99.2% 46.3%
4589818 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.87 81.0 5.81e-01 98.3% 48.5%
3959000 5.2.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel 0.85 81.0 6.47e-01 99.2% 69.9%
4150603 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.85 81.0 5.71e-01 100.0% 46.9%
5082153 5.2.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel 0.85 79.0 5.60e-01 97.5% 48.1%
2179 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.85 80.0 5.62e-01 99.2% 44.3%
4331124 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.85 79.0 5.45e-01 100.0% 41.4%
4279289 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.84 79.0 5.57e-01 100.0% 45.5%
4505869 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 78.0 5.57e-01 100.0% 37.8%
4493828 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 78.0 5.68e-01 99.2% 47.9%
5059693 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 78.0 5.57e-01 99.2% 38.7%
4177906 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 74.0 5.27e-01 94.1% 37.4%
5024979 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 77.0 5.49e-01 99.2% 46.8%
5007962 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 77.0 5.60e-01 100.0% 44.8%
4250515 5.2.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel 0.81 76.0 5.85e-01 100.0% 60.9%
4028934 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 76.0 5.49e-01 99.2% 40.0%
4410663 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.80 75.0 5.75e-01 99.2% 73.8%
4421198 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.79 73.0 5.98e-01 99.2% 69.3%
4935505 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.78 73.0 5.25e-01 100.0% 44.3%
3164811 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.77 72.0 5.46e-01 99.2% 52.5%
3969629 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.77 71.0 5.44e-01 99.2% 52.5%
2526350 1.17.1.0 beta barrels › cradle loop barrel 0.67 40.0 4.98e-01 83.1% 94.7%
3498432 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 37.0 4.16e-01 87.3% 78.9%
3918991 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 36.0 4.12e-01 85.6% 81.2%
5034410 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 40.0 4.36e-01 90.7% 81.0%
4945546 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.55 35.0 3.67e-01 83.1% 70.5%
3278451 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.53 44.0 3.41e-01 92.4% 95.1%
3424048 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.51 46.0 3.18e-01 99.2% 47.7%
3743907 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.50 32.0 2.90e-01 81.4% 44.1%
3722767 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.50 42.0 3.21e-01 93.2% 93.3%
D2 medium residues 119-273
PDB
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF03989.19 best DNA_gyraseA_C 19.2 9.40e-04 31.0% 91.7%
PF03989.19 DNA_gyraseA_C 27.4 2.60e-06 31.0% 87.5%
PF03989.19 DNA_gyraseA_C 16.6 6.10e-03 30.3% 93.8%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1suuA00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.92 86.0 6.70e-01 98.7% 51.2%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.91 87.0 6.56e-01 100.0% 47.8%
3l6vA00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.91 85.0 6.54e-01 100.0% 48.6%
3no0A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.90 82.0 6.51e-01 100.0% 52.5%
3uc1A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.86 83.0 6.42e-01 100.0% 53.0%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.62 33.0 3.86e-01 100.0% 71.6%
1ffvC03 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.52 32.0 3.73e-01 98.7% 84.2%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4388717 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.94 89.0 6.72e-01 98.7% 47.6%
4279289 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.94 90.0 6.73e-01 100.0% 46.8%
4589818 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.94 88.0 6.73e-01 98.1% 48.9%
4606923 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.93 90.0 6.70e-01 100.0% 46.7%
3445642 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.93 90.0 6.63e-01 100.0% 50.7%
4505869 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.92 87.0 6.63e-01 100.0% 47.9%
4935505 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.92 87.0 6.68e-01 99.4% 49.5%
4331124 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.92 89.0 6.48e-01 100.0% 55.1%
5082153 5.2.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel 0.92 87.0 6.68e-01 100.0% 49.0%
5059693 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.92 87.0 6.74e-01 100.0% 50.7%
4569696 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.92 88.0 6.67e-01 100.0% 48.1%
4261933 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.92 89.0 6.71e-01 100.0% 48.4%
4271590 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.92 87.0 6.58e-01 98.1% 48.1%
4102294 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.91 86.0 6.59e-01 100.0% 48.3%
5024979 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.91 85.0 6.49e-01 98.1% 48.1%
4429482 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.91 86.0 6.44e-01 98.1% 48.4%
4074611 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.91 87.0 6.63e-01 99.4% 50.0%
4186650 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.91 85.0 6.53e-01 100.0% 48.4%
2179 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.91 87.0 6.56e-01 100.0% 47.7%
4150603 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.90 86.0 6.57e-01 100.0% 48.4%
5053478 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.90 85.0 6.48e-01 99.4% 48.3%
4602375 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.90 85.0 6.29e-01 98.7% 52.6%
4214118 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.89 83.0 6.62e-01 100.0% 53.8%
4609257 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.89 84.0 6.35e-01 98.1% 51.9%
4177906 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.89 82.0 6.31e-01 96.1% 52.6%
4946214 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.89 86.0 6.46e-01 100.0% 48.0%
5040277 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.88 84.0 6.35e-01 100.0% 47.4%
5007962 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.87 78.0 6.15e-01 100.0% 49.7%
4028934 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.87 82.0 6.38e-01 100.0% 51.2%
4075947 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.85 78.0 6.64e-01 100.0% 63.4%
4421198 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.84 78.0 6.98e-01 100.0% 73.2%
4493828 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 79.0 6.27e-01 100.0% 53.8%
4410663 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 75.0 6.38e-01 100.0% 62.1%
3959000 5.2.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel 0.82 75.0 6.73e-01 97.4% 71.8%
3969629 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 77.0 6.42e-01 100.0% 62.4%
4250515 5.2.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel 0.80 76.0 6.35e-01 100.0% 83.1%
3164811 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.80 76.0 6.29e-01 100.0% 62.0%
5059336 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 32.0 4.05e-01 99.4% 86.7%
3385821 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.56 30.0 3.93e-01 94.8% 98.8%