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OR836606.1WRM43520.1X__00189

Bact-Vir

OR836606.1__WRM43520.1__X__00189

Identity

Accession:: OR836606 ↗
Kingdom:: phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Staphylococcus_phage_LY01

TaxID: 3110553

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-55_161-193

PDB

Domain cluster: representative

CATH (42)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
8ek4A01	1.20.120.20	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein	0.76	59.0	4.97e-01	83.5%	82.0%
2ra1A01	1.20.58.790	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.69	53.0	4.92e-01	81.0%	89.8%
2l3lA01	1.20.58.1250	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain	0.69	52.0	4.76e-01	83.5%	61.3%
2d2sA02	1.20.58.1220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, C-terminal helical domain	0.68	62.0	5.67e-01	100.0%	84.2%
3sszA01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.66	43.0	3.63e-01	83.5%	39.1%
3agtA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.64	50.0	4.18e-01	82.3%	64.7%
3eslA01	1.20.58.2070	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.63	46.0	4.67e-01	83.5%	81.3%
5nl6B01	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.62	48.0	4.21e-01	83.5%	81.0%
4rngC00	1.20.1280.290	Mainly Alpha › Up-down Bundle › Monooxygenase ›	0.61	48.0	4.72e-01	83.5%	89.2%
1bgfA00	1.10.532.10	Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain	0.61	47.0	4.03e-01	82.3%	62.1%
7nazA01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.60	45.0	3.11e-01	93.7%	22.9%
2zueA03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.60	50.0	4.43e-01	93.7%	70.6%
1iq0A03	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.60	53.0	4.70e-01	100.0%	75.0%
2okxA05	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.60	51.0	3.40e-01	94.9%	24.9%
1yvwA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.60	47.0	4.54e-01	84.8%	88.0%
2wvxA04	1.20.1610.10	Mainly Alpha › Up-down Bundle › Glycosyl hydrolase family fold › alpha-1,2-mannosidases domains	0.60	49.0	3.87e-01	91.1%	96.0%
2qqyA00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.60	48.0	3.97e-01	86.1%	89.1%
2vkjA00	1.20.58.2030	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.59	46.0	4.23e-01	91.1%	63.2%
8fbnB01	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.59	50.0	3.67e-01	94.9%	69.8%
1zzpA00	1.20.120.330	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2	0.59	44.0	4.02e-01	81.0%	89.0%
1a7eA00	1.20.120.50	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hemerythrin-like	0.59	45.0	4.01e-01	83.5%	69.5%
1wn0A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.59	43.0	3.71e-01	78.5%	60.3%
5jajA03	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.59	45.0	4.01e-01	83.5%	60.3%
2lhrA00	1.20.58.1270	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	39.0	3.97e-01	93.7%	69.2%
3oxfA05	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.58	40.0	4.12e-01	83.5%	76.0%
5jc3A02	1.20.1320.30	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 ›	0.58	42.0	3.70e-01	78.5%	62.7%
4dmvA01	1.20.58.1190	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.57	44.0	4.33e-01	83.5%	92.9%
3t33A00	1.50.10.10	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.57	47.0	3.04e-01	94.9%	19.9%
1qqeA00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.57	46.0	3.28e-01	94.9%	28.5%
2hjmA01	1.20.120.460	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › protein pf1176 like	0.56	39.0	3.88e-01	100.0%	68.6%
1tqgA00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.56	40.0	3.71e-01	75.9%	86.7%
1s3qG00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.56	49.0	3.92e-01	100.0%	73.0%
2yxhA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.56	45.0	3.99e-01	87.3%	73.5%
4wzxA01	1.20.58.80	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit	0.55	42.0	4.28e-01	82.3%	88.0%
1y6xA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.55	45.0	4.40e-01	88.6%	93.1%
2d2sA01	1.20.58.1210	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain	0.54	48.0	4.26e-01	100.0%	73.3%
1nklA00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.53	37.0	3.76e-01	73.4%	93.6%
4f0cA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	45.0	3.87e-01	100.0%	69.6%
3s63A00	1.10.225.10	Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like	0.52	40.0	3.90e-01	82.3%	88.6%
1t98A01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	38.0	3.76e-01	83.5%	79.3%
2xqyA02	1.20.58.1340	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.50	43.0	3.57e-01	96.2%	86.7%
3qkxB00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	42.0	3.29e-01	94.9%	56.9%

ECOD (34)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4024049	1134.1.1.0 ↗	alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain	0.67	51.0	5.20e-01	83.5%	86.7%
3331975	3930.1.1.0 ↗	alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase	0.66	47.0	4.11e-01	83.5%	48.8%
3877089	109.4.1.1411 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF30303	0.65	53.0	3.49e-01	93.7%	26.5%
5045531	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.63	49.0	4.85e-01	84.8%	82.4%
5063672	109.10.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Translin › Translin	0.62	52.0	4.01e-01	98.7%	40.8%
5050181	3291.1.1.1 ↗	alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7	0.62	44.0	3.46e-01	100.0%	34.7%
3756948	601.19.1.17 ↗	alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Niban2	0.62	47.0	3.72e-01	83.5%	56.5%
5030951	159.1.2.1 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH	0.61	48.0	4.30e-01	83.5%	64.2%
3885169	109.4.1.218 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SNAP	0.61	50.0	3.50e-01	94.9%	26.7%
4366433	159.1.2.1 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH	0.61	48.0	4.45e-01	83.5%	70.4%
3840190	633.10.1.18 ↗	alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like › THU_Piezo1	0.61	47.0	4.21e-01	82.3%	77.3%
3593141	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.60	49.0	3.52e-01	89.9%	41.7%
4848263	109.3.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat	0.59	51.0	3.93e-01	100.0%	51.8%
4104683	159.1.2.1 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH	0.59	47.0	4.25e-01	84.8%	74.3%
5047949	3281.1.1.1 ↗	alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M	0.59	52.0	3.22e-01	100.0%	89.6%
3895156	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.59	44.0	3.61e-01	86.1%	41.9%
1503553	3796.1.1.1 ↗	alpha arrays › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Iron-regulated surface determinant protein H linker domain › Isd_H_B_linker	0.58	39.0	3.97e-01	93.7%	69.2%
5083908	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.58	48.0	4.29e-01	94.9%	90.0%
3845790	192.15.1.0 ↗	alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains	0.58	43.0	4.01e-01	79.7%	67.0%
3688112	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	47.0	3.58e-01	93.7%	39.5%
4162803	159.1.2.1 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PRA-PH	0.56	49.0	4.43e-01	94.9%	92.4%
3960575	610.4.1.0 ↗	alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain	0.56	50.0	4.06e-01	100.0%	83.3%
1144720	633.20.1.1 ↗	alpha bundles › Bromodomain-like › Hypothetical protein PF1176 › Hypothetical protein PF1176 › DUF3216	0.56	39.0	3.89e-01	100.0%	69.4%
3386043	610.4.1.1 ↗	alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY	0.56	49.0	4.09e-01	100.0%	81.4%
5036565	109.10.1.1 ↗	alpha superhelices › Repetitive alpha hairpins › Translin › Translin › Translin	0.55	47.0	3.66e-01	97.5%	46.5%
3184592	109.4.1.1129 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRAPPC9-Trs120	0.55	47.0	4.19e-01	96.2%	76.5%
3549876	109.4.1.1311 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT, HEAT_EZ	0.55	47.0	3.47e-01	100.0%	59.2%
3898536	198.1.1.3 ↗	alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_1	0.55	37.0	3.72e-01	81.0%	67.1%
3583659	109.4.1.1735 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1, TPR_8, TPR_12, TPR_16	0.54	46.0	3.91e-01	98.7%	67.1%
4994292	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.54	45.0	4.26e-01	91.1%	76.6%
4565034	159.1.3.3 ↗	alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › putative NTP pyrophosphohydrolase Exig_1061 › MazG	0.53	43.0	3.74e-01	88.6%	70.4%
3228061	1147.1.1.1 ↗	alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL	0.52	40.0	3.47e-01	83.5%	92.2%
3242506	226.1.1.1 ↗	a+b two layers › POZ domain › POZ domain › POZ domain › BTB	0.52	46.0	3.73e-01	100.0%	60.6%
3592634	5076.1.1.0 ↗	alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier	0.50	42.0	2.90e-01	96.2%	92.2%

D2 high residues 60-158

PDB

Domain cluster: rep: SRR1747046_scaffold_4_prodigal-single.1__X__X__00114__D507-603

CATH (2)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ui3A02	3.30.70.240	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.53	36.0	3.62e-01	86.9%	69.4%
3prbA03	3.30.70.2210	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	34.0	3.85e-01	90.9%	93.2%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4978606	4969.1.1.0 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I	0.73	50.0	4.28e-01	100.0%	44.5%
3514097	4969.1.1.1 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.70	48.0	4.01e-01	100.0%	41.2%
3314223	4969.1.1.1 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.70	48.0	4.10e-01	100.0%	43.8%
3480544	4969.1.1.0 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I	0.70	49.0	4.08e-01	100.0%	43.0%
3404727	4969.1.1.1 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B	0.64	45.0	3.60e-01	100.0%	37.1%
3484038	4969.1.1.0 ↗	alpha bundles › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I › thumb domain in bacteriophage RB69-like DNA polymerase I	0.58	46.0	3.63e-01	100.0%	41.0%