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OR838459.1__WQZ00925.1__X__00031

Bact-Vir

OR838459.1__WQZ00925.1__X__00031

Identity

Accession:
OR838459 ↗
Kingdom:
phage

Quality

63.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Stenotrophomonas_phage_StenR_269

TaxID: 3110548

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 377-467
PDB
D2 medium residues 1-89_177-244
PDB
Domain cluster: rep: CAKLQF020000012.1__CAH1086445.1__SAMEA5780031_02396__00062__D1-91_177-204
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6czfA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.76 72.0 5.55e-01 99.4% 96.3%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.74 68.0 5.80e-01 96.8% 94.5%
5t0oA02 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.60 35.0 4.25e-01 82.8% 87.4%
1ct9A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.59 55.0 5.10e-01 97.5% 100.0%
3vtiA01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 29.0 3.54e-01 93.6% 75.0%
4oi3A00 3.30.70.3090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ORF SCO4226, nickel-binding ferredoxin-like monomer 0.57 30.0 4.11e-01 84.7% 100.0%
2qjvA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 37.0 3.81e-01 96.2% 70.0%
3n79A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.54 28.0 3.60e-01 84.1% 94.9%
5d79A03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.53 30.0 2.91e-01 86.0% 44.4%
3bb5A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 33.0 3.89e-01 93.6% 92.2%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 35.0 3.60e-01 76.4% 68.6%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.52 33.0 3.88e-01 98.1% 94.1%
2lxfA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 27.0 3.04e-01 93.6% 60.3%
3bn7A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 31.0 3.74e-01 86.6% 91.2%
1jhjA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 34.0 3.44e-01 77.1% 65.2%
3lb6C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 29.0 3.72e-01 75.8% 98.9%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991572 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 76.0 6.44e-01 96.2% 100.0%
4321843 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.81 69.0 5.96e-01 87.9% 100.0%
5077548 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.80 74.0 5.88e-01 98.7% 100.0%
4949136 210.1.3.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 0.79 69.0 5.12e-01 90.4% 100.0%
3741900 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.79 74.0 6.11e-01 98.7% 100.0%
3532427 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.79 73.0 6.03e-01 97.5% 100.0%
None — 0.79 72.0 5.98e-01 96.8% 99.2%
4951704 210.1.3.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 0.78 65.0 5.63e-01 86.6% 100.0%
4422215 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 67.0 5.77e-01 89.2% 100.0%
None — 0.78 72.0 5.69e-01 97.5% 93.6%
5009366 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.78 71.0 5.83e-01 96.2% 97.7%
3196133 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 72.0 5.54e-01 97.5% 95.9%
4994017 210.1.3.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 0.77 70.0 5.48e-01 96.2% 99.4%
4947599 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.76 73.0 6.12e-01 100.0% 99.6%
4955225 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.76 69.0 5.73e-01 95.5% 100.0%
5081628 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.76 71.0 5.91e-01 98.1% 94.0%
4954583 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.76 71.0 6.07e-01 99.4% 100.0%
5052100 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.75 72.0 6.00e-01 100.0% 99.6%
5027645 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.75 71.0 5.90e-01 100.0% 99.2%
4999227 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.75 71.0 5.94e-01 100.0% 98.8%
4588679 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.75 70.0 5.88e-01 97.5% 96.7%
4940798 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.75 70.0 5.88e-01 97.5% 93.5%
5041669 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.75 69.0 6.20e-01 96.2% 100.0%
None — 0.75 71.0 5.95e-01 99.4% 100.0%
5070626 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.75 68.0 5.67e-01 95.5% 100.0%
None — 0.74 69.0 5.87e-01 97.5% 95.0%
3965213 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.74 69.0 5.55e-01 96.8% 93.8%
5073588 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.74 68.0 5.63e-01 96.2% 100.0%
5027271 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.74 66.0 5.50e-01 93.6% 100.0%
4680317 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.73 68.0 5.85e-01 97.5% 96.6%
4928834 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.73 68.0 5.97e-01 97.5% 100.0%
5071630 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.73 70.0 5.92e-01 100.0% 99.2%
5032499 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.73 68.0 5.76e-01 98.1% 99.2%
4541620 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.73 67.0 5.61e-01 96.8% 92.9%
4986617 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.73 69.0 6.08e-01 100.0% 100.0%
5010282 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.73 67.0 6.25e-01 96.8% 100.0%
4945633 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.72 69.0 5.92e-01 100.0% 100.0%
5012635 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.72 67.0 5.50e-01 98.1% 99.2%
5011866 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.72 60.0 5.11e-01 86.6% 100.0%
3961853 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.71 65.0 5.64e-01 96.8% 100.0%
5049285 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.71 67.0 5.78e-01 100.0% 100.0%
4991735 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.69 64.0 5.48e-01 96.2% 100.0%
3380383 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.59 48.0 4.52e-01 84.1% 96.8%
3634393 304.4.1.4 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.58 32.0 3.80e-01 93.6% 81.0%
4051078 304.4.1.71 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF4937 0.57 33.0 3.76e-01 93.6% 76.5%
D3 medium residues 90-176
PDB
Domain cluster: rep: putative_glucosamine-fructose-6-phosphate_aminotransferase__YP_007354615__Acanthamoeba_polyphaga_moumouvirus__1269028__D93-180
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13522.12 best GATase_6 40.0 5.20e-10 100.0% 63.8%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.85 80.0 5.65e-01 100.0% 41.6%
7ylzA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.82 77.0 5.59e-01 100.0% 42.7%
1ao0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.79 73.0 4.89e-01 98.9% 33.3%
1ct9A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.78 73.0 5.50e-01 100.0% 46.9%
1jgtB01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 67.0 5.03e-01 100.0% 65.9%
1q15A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.69 58.0 4.39e-01 92.0% 40.5%
3pu9A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.61 53.0 3.91e-01 97.7% 49.8%
2pk0A00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.61 52.0 3.78e-01 95.4% 64.4%
7vhqU01 3.30.479.30 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › Band 7 domain 0.57 42.0 3.95e-01 79.3% 92.7%
4gc1A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.55 44.0 4.23e-01 88.5% 89.1%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 46.0 3.24e-01 97.7% 43.2%
2pvaA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.54 46.0 3.22e-01 98.9% 42.0%
5hftD00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.54 46.0 3.94e-01 98.9% 56.5%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 35.0 3.31e-01 81.6% 59.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3280543 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.87 82.0 5.75e-01 100.0% 46.1%
4588679 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.87 83.0 5.76e-01 100.0% 42.0%
4147605 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.87 82.0 5.71e-01 100.0% 42.4%
3963821 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.87 82.0 5.69e-01 100.0% 40.4%
4680317 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.86 82.0 5.77e-01 100.0% 43.0%
None — 0.86 81.0 5.71e-01 100.0% 42.1%
None — 0.86 81.0 5.75e-01 100.0% 42.6%
None — 0.86 81.0 5.72e-01 100.0% 44.6%
4976025 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.86 81.0 5.67e-01 100.0% 41.2%
4149445 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.86 81.0 5.67e-01 100.0% 40.8%
4541620 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.86 81.0 5.59e-01 100.0% 40.8%
4947903 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.86 81.0 5.66e-01 100.0% 41.2%
None — 0.85 81.0 5.38e-01 100.0% 36.6%
4937741 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.85 74.0 5.68e-01 100.0% 45.1%
4259223 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.85 80.0 5.67e-01 100.0% 42.1%
3959632 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.85 79.0 6.35e-01 98.9% 66.5%
3604150 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.83 78.0 5.39e-01 100.0% 39.6%
5024221 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.83 72.0 5.42e-01 100.0% 42.1%
5055717 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.82 77.0 5.48e-01 100.0% 39.1%
3284789 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.82 77.0 5.53e-01 100.0% 41.3%
3960590 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.82 76.0 5.70e-01 100.0% 48.0%
4224238 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.82 77.0 5.49e-01 100.0% 38.7%
3287103 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.82 77.0 5.46e-01 100.0% 39.6%
3392899 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.81 75.0 5.59e-01 100.0% 44.4%
3263898 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.81 75.0 5.30e-01 100.0% 38.1%
5051945 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.80 75.0 5.46e-01 100.0% 41.9%
4974457 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.79 73.0 5.34e-01 100.0% 40.5%
7838 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.75 68.0 5.15e-01 100.0% 66.5%
4244248 210.1.3.2 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › CarA_N 0.72 61.0 4.61e-01 92.0% 40.0%
5082626 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.67 57.0 4.58e-01 100.0% 47.6%
3602552 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.61 47.0 3.86e-01 82.8% 67.7%
3227676 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.60 46.0 3.80e-01 82.8% 65.6%
5044032 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.58 47.0 3.85e-01 96.6% 46.5%
5037408 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.58 43.0 4.05e-01 78.2% 85.7%
4991921 230.5.1.1 ↗ a+b two layers › T-fold › Band 7/SPFH domain › Band 7/SPFH domain › Band_7 0.58 44.0 3.63e-01 82.8% 63.6%
5004730 230.1.1.3 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.57 45.0 4.19e-01 87.4% 97.3%
4940518 230.6.1.1 ↗ a+b two layers › T-fold › 40S ribosomal protein S3A C-terminal domain › 40S ribosomal protein S3A C-terminal domain › Ribosomal_S3Ae 0.57 43.0 4.20e-01 80.5% 93.7%
3968836 11.1.1.1153 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2169 0.54 40.0 3.51e-01 78.2% 71.2%
5043829 4081.1.1.0 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.51 40.0 3.46e-01 90.8% 92.3%