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OR838459.1__WQZ00969.1__X__00075

Bact-Vir

OR838459.1__WQZ00969.1__X__00075

Identity

Accession:
OR838459 ↗
Kingdom:
phage

Quality

61.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 152-232
PDB
D2 medium residues 63-118
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6gc1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.78 41.0 2.75e-01 80.4% 15.2%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.67 33.0 2.55e-01 71.4% 19.5%
6jx5A01 3.30.2160.10 Alpha Beta › 2-Layer Sandwich › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain 0.67 34.0 3.11e-01 80.4% 36.0%
3f42A00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.67 57.0 4.69e-01 91.1% 61.3%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 57.0 4.20e-01 100.0% 97.8%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.29e-01 96.4% 67.0%
3bzcA03 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.61 42.0 3.22e-01 71.4% 70.3%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.09e-01 96.4% 58.8%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.61 52.0 4.43e-01 96.4% 66.3%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.13e-01 94.6% 92.2%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.60 44.0 4.01e-01 80.4% 60.6%
2ymuA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.26e-01 96.4% 68.6%
6jwfA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.60 50.0 3.06e-01 94.6% 52.6%
3a8pB01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 51.0 3.96e-01 94.6% 97.4%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 47.0 3.00e-01 96.4% 57.1%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 39.0 3.63e-01 71.4% 63.9%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.57 44.0 2.86e-01 92.9% 25.3%
2gupA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 41.0 3.48e-01 78.6% 82.5%
2kgtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 41.0 3.78e-01 76.8% 61.1%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 43.0 3.35e-01 82.1% 76.9%
3ll3B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 47.0 3.17e-01 96.4% 74.3%
2gs3A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.56 32.0 2.32e-01 83.9% 16.4%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 41.0 3.36e-01 80.4% 66.7%
4gj1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 42.0 2.88e-01 87.5% 64.6%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 39.0 2.99e-01 76.8% 74.1%
2m72A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 44.0 3.22e-01 89.3% 79.7%
4htlA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 39.0 3.35e-01 80.4% 72.0%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 46.0 2.77e-01 96.4% 22.1%
3ebrA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 38.0 2.89e-01 78.6% 69.9%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.53 35.0 3.18e-01 83.9% 50.7%
3nreA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 38.0 2.45e-01 78.6% 19.6%
1xc3A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 41.0 3.45e-01 87.5% 65.0%
3cynB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 3.09e-01 91.1% 94.2%
7agpA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.53 36.0 3.52e-01 76.8% 65.6%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 37.0 3.68e-01 73.2% 86.0%
2hh8A00 3.30.1810.10 Alpha Beta › 2-Layer Sandwich › YdfO-like fold › YdfO-like 0.52 37.0 3.04e-01 80.4% 74.0%
3r8eA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 38.0 2.96e-01 82.1% 50.7%
2x49A01 3.40.30.60 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 0.52 34.0 2.83e-01 73.2% 39.6%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 40.0 3.05e-01 83.9% 91.0%
2jfdA03 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.52 34.0 3.27e-01 73.2% 59.1%
3cjxA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 2.77e-01 76.8% 73.3%
5wq5A01 3.40.50.1970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 39.0 2.94e-01 87.5% 60.4%
4rz2B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 39.0 2.47e-01 80.4% 21.9%
2nnwA01 3.30.420.220 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 42.0 3.41e-01 100.0% 100.0%
2b7jB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.51 41.0 2.93e-01 89.3% 31.7%
3emiA00 3.90.1780.10 Alpha Beta › Alpha-Beta Complex › Trimeric adhesin › Trimeric adhesin 0.51 39.0 3.30e-01 91.1% 70.0%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.50 34.0 2.72e-01 75.0% 65.7%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3702049 2485.1.1.12 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.87 53.0 3.77e-01 87.5% 23.3%
3585813 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.87 45.0 4.27e-01 78.6% 44.6%
None 0.84 47.0 2.94e-01 85.7% 11.6%
4944328 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.80 48.0 3.55e-01 89.3% 26.2%
4981966 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.70 59.0 4.09e-01 98.2% 30.5%
3487488 220.1.1.37 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 0.68 57.0 4.11e-01 91.1% 88.7%
4303957 2006.1.6.15 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58 0.67 54.0 3.91e-01 87.5% 32.9%
3958774 2006.1.6.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.66 54.0 3.40e-01 87.5% 18.3%
4545531 220.1.1.255 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_10 0.65 44.0 3.93e-01 71.4% 60.0%
5014656 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.65 49.0 4.74e-01 83.9% 100.0%
146948 3170.1.1.1 a+b two layers › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › uncharacterized protein YP_926445.1 › DUF4144 0.65 47.0 3.85e-01 80.4% 39.5%
3736412 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.64 42.0 2.67e-01 91.1% 12.2%
5013411 3407.1.1.2 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.63 43.0 3.38e-01 71.4% 54.2%
3174597 633.23.1.9 alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.62 55.0 3.62e-01 100.0% 38.3%
3183857 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.62 50.0 4.07e-01 91.1% 95.5%
3205871 173.1.1.0 alpha arrays › Uteroglobin-like › Uteroglobin-like › Uteroglobin-like 0.62 41.0 3.86e-01 73.2% 54.1%
3876027 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.60 54.0 3.88e-01 98.2% 70.7%
4995988 3407.1.1.2 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.59 53.0 3.96e-01 98.2% 98.5%
3250206 65.1.1.0 beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases 0.59 40.0 3.69e-01 71.4% 96.0%
5009633 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 41.0 3.56e-01 73.2% 91.1%
3200896 245.1.1.0 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 0.59 40.0 3.91e-01 73.2% 64.6%
5044594 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.59 42.0 3.65e-01 76.8% 51.1%
4004179 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.59 54.0 3.50e-01 100.0% 44.8%
3390227 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 40.0 3.37e-01 73.2% 48.6%
4982318 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.58 43.0 4.17e-01 87.5% 71.7%
3506427 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.58 45.0 3.52e-01 85.7% 40.8%
3204019 387.6.1.0 few secondary structure elements › omega toxin-like 0.57 43.0 3.86e-01 80.4% 60.3%
4993724 3407.1.1.2 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.57 44.0 3.24e-01 80.4% 79.2%
3777243 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.57 46.0 3.45e-01 87.5% 79.3%
4932280 3407.1.1.0 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.57 45.0 3.90e-01 89.3% 98.9%
5001814 3407.1.1.0 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.56 42.0 3.59e-01 78.6% 71.8%
3399725 220.1.1.50 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.56 43.0 3.46e-01 83.9% 99.1%
4979100 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 43.0 3.33e-01 83.9% 80.0%
4046039 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.56 43.0 3.63e-01 92.9% 52.9%
5050909 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 41.0 3.09e-01 78.6% 77.7%
3360324 2485.1.1.12 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › SCO1-SenC 0.55 31.0 2.46e-01 75.0% 22.3%
5043198 3407.1.1.2 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.55 42.0 3.40e-01 85.7% 96.5%
3327705 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.55 38.0 3.06e-01 76.8% 70.0%
5031945 3407.1.1.2 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.55 44.0 3.37e-01 89.3% 97.0%
5039152 2485.1.1.4 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › AhpC-TSA 0.55 41.0 3.14e-01 87.5% 98.0%
4028473 331.23.1.7 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C 0.55 39.0 3.50e-01 82.1% 56.0%
5075934 3407.1.1.2 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.54 44.0 3.37e-01 89.3% 97.0%
3269373 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 46.0 3.95e-01 96.4% 97.8%
3734754 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.53 45.0 2.86e-01 100.0% 99.0%
4933665 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.53 37.0 3.30e-01 76.8% 50.0%
4811157 2003.1.2.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 0.53 37.0 2.57e-01 73.2% 29.3%
5045224 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 35.0 3.23e-01 71.4% 57.6%
5053230 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 42.0 3.35e-01 91.1% 41.7%
3604437 2007.13.1.1 a/b three-layered sandwiches › Flavodoxin-like › Rossmann-like domains in magnesium chelatase catalytic subunit › Rossmann-like domains in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.52 40.0 2.60e-01 85.7% 53.8%
3422502 101.1.3.0 alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.52 43.0 3.50e-01 91.1% 54.3%
4942756 3407.1.1.2 mixed a+b and a/b › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop5_56-rel_N_Arc 0.52 40.0 3.21e-01 85.7% 97.5%
4116094 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.52 38.0 3.15e-01 82.1% 86.1%
5051523 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 40.0 3.12e-01 85.7% 59.2%
5068734 244.4.1.2 a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases 0.51 39.0 2.94e-01 83.9% 49.3%
3516087 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 37.0 3.43e-01 80.4% 100.0%