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OR966858.1__WQZ00687.1__NP1_32__00032

Bact-Vir

OR966858.1__WQZ00687.1__NP1_32__00032

Identity

Accession:
OR966858 ↗
Kingdom:
phage

Quality

71.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xipdecavirus› Xanthomonas_phage_NP1

TaxID: 3110517

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-36
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a44C02 4.10.80.120 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.76 39.0 4.05e-01 75.0% 76.2%
5d1pA01 3.10.450.740 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.63 47.0 4.04e-01 100.0% 50.7%
4ms4B02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.62 43.0 2.71e-01 71.9% 22.2%
2ekdA00 3.40.50.11570 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Protein of unknown function DUF257 0.60 46.0 2.90e-01 93.8% 90.6%
1h0hB02 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 46.0 3.86e-01 100.0% 82.8%
2w00A05 1.20.58.2040 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.56 41.0 3.01e-01 81.2% 52.5%
1zakA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 42.0 2.55e-01 90.6% 10.9%
1wevA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.55 37.0 3.06e-01 78.1% 28.1%
4f9cA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.55 40.0 2.49e-01 75.0% 30.1%
1cjaA02 1.10.1070.11 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain 0.54 38.0 2.46e-01 75.0% 37.3%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 2.57e-01 93.8% 66.5%
2y8nB01 2.20.70.100 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.51 35.0 3.44e-01 87.5% 54.8%
6lf2B01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 35.0 2.58e-01 96.9% 21.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3397452 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.72 51.0 4.30e-01 100.0% 40.0%
3585020 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 48.0 4.04e-01 78.1% 90.0%
3406180 501.1.1.0 ↗ few secondary structure elements › Heparin-binding domain from vascular endothelial growth factor › Heparin-binding domain from vascular endothelial growth factor › Heparin-binding domain from vascular endothelial growth factor 0.57 41.0 3.51e-01 90.6% 53.1%
3411769 376.1.3.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD 0.56 40.0 3.06e-01 87.5% 24.1%
4257543 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 2.86e-01 90.6% 32.3%
5028979 205.1.1.20 ↗ a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_15 0.53 38.0 3.22e-01 90.6% 41.4%
3494257 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.53 41.0 2.41e-01 100.0% 12.9%
3511138 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.55e-01 100.0% 65.0%
None — 0.52 40.0 2.66e-01 96.9% 83.0%