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ORF01L

Euk-Vir

Marbled_eel_polyomavirus

ORF01L__YP_009252373__Marbled_eel_polyomavirus__1662286

Identity

Accession:: YP_009252373 ↗
Protein ID:: ORF01L
Kingdom:: euk

Quality

64.6 mean pLDDT

Taxonomy

Shotokuvirae› Cossaviricota› Papovaviricetes› Sepolyvirales› Polyomaviridae› Marbled_eel_polyomavirus

TaxID: 1662286

Cluster

View cluster (129 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 286-381

PDB

D2 high residues 415-505

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	36.6	3.50e-09	98.9%	19.2%

CATH (20)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1svmA01	1.10.10.510	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Zinc finger, large T-antigen D1 domain	0.91	81.0	8.24e-01	100.0%	94.4%
2odmA00	1.10.287.750	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like	0.67	32.0	3.47e-01	92.3%	53.2%
1sj8A02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.66	32.0	2.91e-01	98.9%	34.4%
2xubA05	6.10.140.1450	Special › Helix non-globular › Helix Hairpins ›	0.62	32.0	3.20e-01	100.0%	47.9%
3s6jE02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.61	37.0	4.20e-01	100.0%	79.7%
4h63H01	1.20.58.1710	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.60	31.0	3.40e-01	100.0%	61.1%
1i6zA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.59	32.0	2.81e-01	91.2%	36.3%
2hraA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.58	32.0	3.29e-01	86.8%	52.7%
3d8lA00	1.10.8.940	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12	0.58	36.0	3.63e-01	71.4%	61.5%
1hbgA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.58	39.0	3.32e-01	87.9%	42.9%
3g7rA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.57	39.0	3.14e-01	100.0%	33.9%
2oocB00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.56	42.0	4.02e-01	79.1%	99.0%
2au5A00	1.20.120.590	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › EF2947-like	0.54	41.0	3.69e-01	83.5%	92.2%
1a41A02	1.20.120.380	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2	0.53	38.0	3.77e-01	96.7%	73.4%
7lb8B02	1.10.3470.10	Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC	0.52	44.0	3.15e-01	97.8%	81.3%
2go7A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.51	30.0	3.37e-01	100.0%	77.6%
3f4mA00	1.20.1440.160	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like	0.51	38.0	3.26e-01	81.3%	97.4%
2gscC00	1.20.1440.60	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence	0.51	35.0	3.40e-01	74.7%	95.5%
4w4kA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.50	33.0	3.45e-01	93.4%	73.2%
3zbhA00	1.10.287.1060	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like	0.50	33.0	3.35e-01	97.8%	67.8%

ECOD (17)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3506727	142.1.1.0 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors	0.69	36.0	3.26e-01	85.7%	36.7%
4996909	7014.1.1.1 ↗	alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA	0.68	44.0	3.68e-01	100.0%	39.3%
3221573	611.3.1.0 ↗	alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.67	29.0	3.22e-01	100.0%	48.0%
3686025	604.7.1.10 ↗	alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A › Tmemb_170	0.67	34.0	2.85e-01	100.0%	29.0%
3277855	3562.1.1.3 ↗	alpha bundles › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › Calcium release-activated calcium channel protein 1 › DUF6328	0.63	33.0	2.85e-01	92.3%	31.7%
5012473	5086.1.1.0 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins	0.61	34.0	3.23e-01	94.5%	45.5%
3197615	3755.3.1.355 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Uds1	0.60	32.0	2.90e-01	97.8%	38.4%
3621306	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.56	39.0	3.51e-01	74.7%	95.7%
3869132	5050.1.1.22 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1_like	0.55	48.0	3.64e-01	95.6%	84.8%
4960231	4323.1.1.0 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C	0.54	34.0	2.94e-01	93.4%	40.0%
3793454	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.54	38.0	3.15e-01	74.7%	90.3%
4973291	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	38.0	4.04e-01	96.7%	87.5%
3728016	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.52	40.0	2.93e-01	82.4%	66.7%
3970774	5050.1.1.0 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter	0.51	36.0	3.02e-01	75.8%	98.9%
4671536	3718.1.1.1 ↗	alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT	0.51	35.0	3.49e-01	90.1%	67.4%
4078372	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.51	44.0	3.52e-01	100.0%	73.3%
3974260	5050.1.1.9 ↗	alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1	0.50	42.0	3.39e-01	94.5%	91.6%

D3 medium residues 507-563_696-717

PDB

Domain cluster: representative

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3577230	604.1.1.5 ↗	alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_3	0.52	36.0	3.30e-01	72.2%	54.3%
3219466	2484.1.1.0 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like	0.51	39.0	2.86e-01	86.1%	39.2%

D4 medium residues 564-695

PDB

Domain cluster: rep: large_T_antigen__YP_009553187__Philantomba_monticola_polyomavirus_1__2170411__D436-450_495-593

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF06431.17 best	Polyoma_lg_T_C	152.6	2.20e-44	100.0%	30.7%