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ORF04
Euk-VirPsittacine_aviadenovirus_B
ORF04__YP_009508589__Psittacine_aviadenovirus_B__2169709
Identity
- Accession:
- YP_009508589 ↗
- Protein ID:
- ORF04
- Kingdom:
- euk
Quality
71.1
mean pLDDT
Taxonomy
Bamfordvirae›
Preplasmiviricota›
Pharingeaviricetes›
Rowavirales›
Adenoviridae›
Aviadenovirus›
Psittacine_aviadenovirus_B
TaxID: 2169709
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-78
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4llgM00 | 3.10.20.510 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor | 0.62 | 42.0 | 4.61e-01 | 71.2% | 96.0% |
| 1yk9A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.58 | 49.0 | 3.69e-01 | 100.0% | 88.6% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.57 | 40.0 | 3.76e-01 | 74.2% | 95.2% |
| 3op6A00 | 3.90.960.10 | Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain | 0.56 | 44.0 | 3.46e-01 | 86.4% | 43.2% |
| 4tpuA02 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.56 | 32.0 | 4.03e-01 | 100.0% | 100.0% |
| 1y6kR01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.54e-01 | 100.0% | 56.9% |
| 3kfwX02 | 3.30.70.2650 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.66e-01 | 84.8% | 87.8% |
| 2aehA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 41.0 | 3.72e-01 | 97.0% | 92.7% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4072161 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.64 | 50.0 | 3.81e-01 | 86.4% | 42.5% |
| 3277720 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.61 | 37.0 | 4.44e-01 | 100.0% | 100.0% |
| 3969678 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.60 | 47.0 | 3.59e-01 | 86.4% | 42.5% |
| 4257815 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.60 | 46.0 | 3.57e-01 | 86.4% | 42.8% |
| 5048810 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.60 | 47.0 | 3.64e-01 | 87.9% | 43.1% |
| 3969999 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 47.0 | 3.69e-01 | 89.4% | 80.0% |
| 4851946 | 299.1.1.1 ↗ | a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit | 0.56 | 45.0 | 3.50e-01 | 92.4% | 42.1% |
| 4960524 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 36.0 | 4.24e-01 | 100.0% | 100.0% |
| 3595471 | 317.1.1.0 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase | 0.55 | 45.0 | 3.38e-01 | 100.0% | 97.5% |
| 3606070 | 7032.1.1.0 ↗ | a+b two layers › Paratox › Paratox › Paratox | 0.54 | 37.0 | 3.89e-01 | 90.9% | 83.3% |
| 2905139 | 4187.1.1.2 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL | 0.53 | 40.0 | 4.25e-01 | 97.0% | 96.6% |
| 3738773 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.52 | 35.0 | 3.77e-01 | 97.0% | 83.6% |
| 3581478 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.52 | 32.0 | 3.33e-01 | 75.8% | 66.7% |
| 3862518 | 4076.1.1.2 ↗ | a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Cauli_VI | 0.51 | 37.0 | 3.91e-01 | 92.4% | 98.2% |
| 3613979 | 317.1.1.0 ↗ | a+b two layers › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase › Translation initiation factor eIF4e and phosphothreonine lyase | 0.51 | 42.0 | 3.12e-01 | 100.0% | 95.6% |
| 4864430 | 3740.1.1.1 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_N,FrhB_FdhB_C | 0.51 | 41.0 | 2.81e-01 | 90.9% | 94.1% |
| 3193319 | 2.1.1.128 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Arb1 | 0.51 | 38.0 | 2.93e-01 | 86.4% | 81.7% |
| 4424001 | 101.1.9.83 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM | 0.50 | 42.0 | 3.49e-01 | 93.9% | 79.2% |