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ORF060_RNA_polymerase-associated_protein_RAP94
Euk-VirOrf_virus
ORF060_RNA_polymerase-associated_protein_RAP94__NP_957837__Orf_virus__10258
Identity
- Accession:
- NP_957837 ↗
- Protein ID:
- ORF060_RNA_polymerase-associated_protein_RAP94
- Kingdom:
- euk
Quality
61.7
mean pLDDT
Taxonomy
Bamfordvirae›
Nucleocytoviricota›
Pokkesviricetes›
Chitovirales›
Poxviridae›
Parapoxvirus›
Orf_virus
TaxID: 10258
Cluster
View cluster (28 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-89
D2
high
residues 393-590
Domain cluster:
rep: RNA_polymerase-associated_protein_RAP94__YP_009046135__Penguinpox_virus__648998__D394-584
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03294.20 best | Pox_Rap94 | 329.1 | 8.10e-98 | 100.0% | 23.9% |
D3
high
residues 651-802
Domain cluster:
rep: RAP94_RNA_pol_assoc_protein__YP_008004477__Choristoneura_rosaceana_entomopoxvirus_L__1293539__D643-819
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03294.20 best | Pox_Rap94 | 230.0 | 7.40e-68 | 100.0% | 19.1% |
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h8zA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 21.0 | 3.27e-01 | 86.8% | 76.6% |
| 3p54A02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.53 | 22.0 | 3.06e-01 | 86.8% | 77.5% |
| 1okeB02 | 3.30.67.10 | Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 | 0.53 | 23.0 | 3.04e-01 | 88.8% | 74.0% |
| 1ts9A00 | 2.30.30.210 | Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 | 0.52 | 33.0 | 4.00e-01 | 77.6% | 98.0% |
| 4bs9A01 | 3.90.930.60 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.50 | 25.0 | 3.00e-01 | 91.4% | 69.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5033242 | 4.7.1.1 ↗ | beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 | 0.53 | 30.0 | 3.84e-01 | 71.7% | 97.6% |
| 4581498 | 2003.1.2.49 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2+FAD_binding_3 | 0.53 | 39.0 | 3.07e-01 | 76.3% | 90.9% |
| 4673663 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.52 | 40.0 | 3.21e-01 | 81.6% | 94.4% |
| 3222575 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.51 | 40.0 | 3.36e-01 | 83.6% | 59.1% |
| 3734431 | 2003.1.2.13 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.50 | 37.0 | 2.92e-01 | 76.3% | 91.8% |
D4
medium
residues 107-132_247-294
D5
medium
residues 197-246