←Back to structures

ORF105

Euk-Vir

Lymantria_xylina_nucleopolyhedrovirus

ORF105__YP_003517845__Lymantria_xylina_nucleopolyhedrovirus__166921

Identity

Accession:
YP_003517845 ↗
Protein ID:
ORF105
Kingdom:
euk

Quality

78.9 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Lymantria_xylina_nucleopolyhedrovirus

TaxID: 166921

Cluster

View cluster (21 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-229
PDB
Domain cluster: rep: BML_08182015_1_5m_scaffold_5_prodigal-single.1__X__X__00022__D3-247
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10860.13 best DUF2661 82.9 2.60e-23 51.3% 99.1%
D2 high residues 262-327
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k1aA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.69 60.0 4.15e-01 100.0% 28.1%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 49.0 5.07e-01 87.9% 85.7%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.60 49.0 4.48e-01 87.9% 80.0%
7xcnM01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.59 52.0 4.94e-01 98.5% 94.9%
3q18A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.58 48.0 4.16e-01 100.0% 74.1%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.56 44.0 4.10e-01 84.8% 68.7%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 45.0 4.33e-01 90.9% 80.0%
2gshA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 37.0 2.90e-01 86.4% 30.9%
2ovbA02 1.25.40.460 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 42.0 3.95e-01 100.0% 70.9%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 43.0 4.15e-01 89.4% 86.5%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.53 42.0 3.54e-01 92.4% 57.9%
1f7uA02 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.53 44.0 3.66e-01 97.0% 64.8%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.51 45.0 3.87e-01 100.0% 62.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3798220 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.69 55.0 4.28e-01 97.0% 38.7%
3620695 109.3.1.162 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.68 53.0 4.03e-01 93.9% 34.1%
4947988 4995.1.1.5 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding 0.65 58.0 5.46e-01 98.5% 97.5%
4955947 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.65 60.0 5.76e-01 100.0% 100.0%
3502206 109.3.1.166 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.65 55.0 3.84e-01 100.0% 29.2%
3818267 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.64 58.0 4.86e-01 100.0% 62.7%
5075919 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.64 57.0 5.34e-01 98.5% 96.2%
5050707 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.64 57.0 5.51e-01 100.0% 100.0%
4933309 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.63 53.0 5.56e-01 95.5% 98.3%
3629231 109.4.1.1255 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N, Cnd1 0.63 50.0 2.86e-01 100.0% 7.6%
4930916 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.63 57.0 5.21e-01 100.0% 89.4%
4983557 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.63 57.0 5.45e-01 98.5% 98.7%
5002850 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.63 57.0 5.03e-01 100.0% 82.1%
4989102 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.63 57.0 5.13e-01 100.0% 86.7%
4997249 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.62 54.0 4.95e-01 97.0% 87.1%
5003027 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.61 55.0 4.96e-01 100.0% 92.2%
5051767 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.61 56.0 5.34e-01 100.0% 98.7%
5047897 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.61 55.0 4.99e-01 97.0% 89.4%
3279151 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.61 52.0 4.76e-01 98.5% 94.4%
5041259 4995.1.1.1 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like › B12-binding_2 0.58 52.0 4.89e-01 100.0% 96.2%
3755802 604.12.1.98 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › NKAIN 0.56 46.0 3.94e-01 89.4% 65.7%
4672360 604.1.1.4 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SbsC_C 0.56 48.0 4.35e-01 90.9% 75.3%