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ORF108

Euk-Vir

Spodoptera_eridania_nucleopolyhedrovirus

ORF108__YP_010087109__Spodoptera_eridania_nucleopolyhedrovirus__2315721

Identity

Accession:
YP_010087109 ↗
Protein ID:
ORF108
Kingdom:
euk

Quality

90.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_eridania_nucleopolyhedrovirus

TaxID: 2315721

Cluster

View cluster (25 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-66
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.70 47.0 4.75e-01 76.4% 70.4%
1bkbA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 47.0 4.49e-01 72.7% 98.5%
3a5zD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 48.0 4.58e-01 76.4% 96.9%
2eifA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 47.0 4.61e-01 74.5% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.66 45.0 4.60e-01 76.4% 73.1%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.66 43.0 4.49e-01 74.5% 72.5%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 47.0 4.83e-01 76.4% 84.3%
2vnuD04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 44.0 3.86e-01 70.9% 87.3%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 48.0 4.45e-01 81.8% 63.4%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 45.0 4.08e-01 89.1% 53.2%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 46.0 4.22e-01 76.4% 90.4%
4pqdA00 3.90.570.10 Alpha Beta › Alpha-Beta Complex › Sugar Binding Protein, Amyloid A4 Protein; Chain A › Amyloidogenic glycoprotein, heparin-binding domain 0.63 43.0 3.55e-01 72.7% 89.5%
2id0A04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 3.68e-01 70.9% 74.7%
1uebA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 48.0 4.64e-01 81.8% 98.4%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 42.0 4.02e-01 76.4% 59.4%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 44.0 2.80e-01 76.4% 26.5%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 45.0 4.44e-01 78.2% 91.5%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 48.0 4.63e-01 85.5% 100.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.40e-01 74.5% 88.7%
3cgbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 51.0 3.65e-01 92.7% 79.8%
2vd5B01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 45.0 3.11e-01 80.0% 58.8%
8f5pE01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 40.0 2.46e-01 70.9% 24.4%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 45.0 4.03e-01 85.5% 69.1%
3i35A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 40.0 4.02e-01 72.7% 91.2%
1b9mB02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.59 45.0 4.13e-01 83.6% 80.6%
6l6jA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 3.61e-01 90.9% 66.9%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 3.62e-01 90.9% 65.4%
2z4hA02 2.40.50.540 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain 0.58 40.0 3.55e-01 74.5% 90.7%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.09e-01 87.3% 95.9%
2gumB03 2.30.29.100 Mainly Beta › Roll › PH-domain like › 0.57 41.0 3.27e-01 78.2% 90.1%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.57 39.0 3.85e-01 81.8% 66.7%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 42.0 3.61e-01 83.6% 54.2%
3a54A01 2.40.50.340 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 43.0 3.78e-01 89.1% 77.8%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.58e-01 83.6% 70.0%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 36.0 3.32e-01 80.0% 50.7%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 3.49e-01 90.9% 50.0%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 45.0 3.49e-01 100.0% 94.8%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.53 39.0 3.11e-01 87.3% 94.3%
2dk1A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 37.0 3.83e-01 80.0% 82.0%
1cb8A03 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.52 36.0 2.97e-01 72.7% 88.2%
4fflA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 36.0 2.49e-01 78.2% 45.2%
3mmyA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 39.0 2.44e-01 83.6% 64.1%
1i3zA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.52 36.0 3.13e-01 78.2% 64.1%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 37.0 2.37e-01 78.2% 15.5%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.53e-01 78.2% 92.4%
3h1tA01 3.90.1570.30 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.51 37.0 2.84e-01 80.0% 73.7%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 35.0 2.78e-01 72.7% 81.7%
5wbyC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 35.0 2.30e-01 76.4% 30.7%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.50 35.0 2.65e-01 72.7% 34.3%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3328618 4.1.1.303 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_retrovirus 0.73 49.0 5.51e-01 76.4% 95.0%
3737349 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 49.0 4.96e-01 72.7% 78.2%
4975150 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 52.0 5.06e-01 78.2% 75.0%
4947995 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 50.0 5.09e-01 76.4% 81.8%
4058174 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.70 47.0 4.50e-01 70.9% 75.4%
3240406 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.69 51.0 3.97e-01 78.2% 60.9%
4352991 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 48.0 4.67e-01 72.7% 100.0%
3227946 2.1.1.126 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF272 0.68 49.0 4.65e-01 74.5% 96.9%
4992873 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 48.0 4.73e-01 74.5% 79.3%
338 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.68 47.0 4.49e-01 72.7% 98.5%
5079023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 5.10e-01 76.4% 91.1%
4950397 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 47.0 4.72e-01 72.7% 78.2%
5080835 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 48.0 4.80e-01 74.5% 80.0%
3230503 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 49.0 3.32e-01 76.4% 48.4%
5058671 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 49.0 4.91e-01 76.4% 78.2%
4932460 2.1.1.13 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a 0.67 46.0 4.39e-01 70.9% 98.4%
5017215 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 45.0 4.60e-01 70.9% 74.5%
3581611 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 46.0 4.76e-01 85.5% 78.0%
4947996 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 45.0 4.52e-01 70.9% 76.4%
3253321 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 45.0 4.27e-01 70.9% 84.6%
4945673 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 45.0 4.30e-01 70.9% 96.9%
4168836 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.66 51.0 4.67e-01 81.8% 97.1%
4928595 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.66 49.0 3.96e-01 80.0% 62.9%
4011604 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 50.0 4.50e-01 81.8% 61.3%
5044373 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.61e-01 76.4% 78.3%
5003400 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 45.0 3.72e-01 74.5% 56.2%
4119533 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.65 48.0 4.64e-01 76.4% 100.0%
5050610 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 44.0 4.08e-01 70.9% 100.0%
3261395 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 4.59e-01 78.2% 72.4%
3586203 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 47.0 4.44e-01 78.2% 90.8%
5072502 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 45.0 4.46e-01 74.5% 100.0%
None — 0.64 50.0 2.80e-01 89.1% 7.8%
4816818 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.64 44.0 4.60e-01 85.5% 85.1%
5002450 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 45.0 4.59e-01 80.0% 76.4%
3358753 4.1.1.381 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5, KOW4_SPT5 0.64 45.0 3.25e-01 76.4% 26.1%
3442276 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 44.0 3.39e-01 70.9% 80.0%
4475796 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 43.0 4.33e-01 70.9% 80.0%
4987320 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 45.0 4.44e-01 78.2% 96.7%
4425795 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.62 48.0 4.58e-01 83.6% 100.0%
4935682 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 45.0 4.52e-01 81.8% 78.2%
3243842 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 44.0 3.59e-01 78.2% 86.4%
4032291 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.61 46.0 4.42e-01 81.8% 98.5%
5011618 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 3.75e-01 94.5% 36.4%
3671986 4.1.1.238 ↗ beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.60 46.0 4.29e-01 83.6% 65.7%
4433263 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.60 45.0 4.34e-01 81.8% 98.5%
3354326 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.60 39.0 3.84e-01 70.9% 61.7%
3506279 4.1.1.112 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_1_RapA 0.60 44.0 4.42e-01 80.0% 80.0%
3381974 2003.1.2.47 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NDH2_C 0.59 50.0 3.32e-01 94.5% 79.6%
5064802 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 39.0 3.46e-01 72.7% 95.6%
4010184 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.58 44.0 3.48e-01 85.5% 67.2%
4187924 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 47.0 3.72e-01 92.7% 68.3%
4932368 2005.1.1.17 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f 0.57 43.0 2.84e-01 83.6% 72.1%
4978946 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 4.56e-01 89.1% 100.0%
3948516 2.1.1.10 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › EFP 0.57 45.0 4.24e-01 83.6% 95.4%
3982652 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 45.0 3.38e-01 89.1% 59.3%
4316393 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.56 40.0 3.20e-01 76.4% 56.4%
None — 0.55 39.0 2.64e-01 80.0% 46.4%
4481603 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.55 43.0 3.77e-01 83.6% 77.5%
3397680 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 44.0 2.57e-01 100.0% 47.2%
4927852 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.87e-01 94.5% 97.8%
3373479 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.54 40.0 2.61e-01 81.8% 69.5%
3778919 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 42.0 2.58e-01 85.5% 75.7%
5072324 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.53 44.0 3.74e-01 94.5% 85.3%
4626431 109.21.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › WD40 0.53 43.0 2.49e-01 100.0% 45.1%
4027011 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 39.0 2.51e-01 81.8% 48.2%
3253491 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 44.0 4.23e-01 100.0% 93.8%
4028139 64.1.1.0 ↗ beta meanders › WW domain-like › WW domain › WW domain 0.52 36.0 3.66e-01 74.5% 72.7%
3166499 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 42.0 2.45e-01 100.0% 44.6%
4279385 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.52 36.0 3.02e-01 70.9% 84.8%
4958343 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.51 41.0 3.60e-01 94.5% 95.6%