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ORF128

Euk-Vir

Spodoptera_frugiperda_granulovirus

ORF128__YP_009121913__Spodoptera_frugiperda_granulovirus__307454

Identity

Accession:: YP_009121913 ↗
Protein ID:: ORF128
Kingdom:: euk

Quality

77.0 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Betabaculovirus› Spodoptera_frugiperda_granulovirus

TaxID: 307454

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 52-130

PDB

Domain cluster: rep: ORF056__YP_009121841__Spodoptera_frugiperda_granulovirus__307454__D22-94

CATH (5)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qrdB01	2.20.25.290	Mainly Beta › Single Sheet › N-terminal domain of TfIIb ›	0.57	26.0	3.50e-01	83.5%	86.5%
3eb8B01	3.10.450.460	Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain	0.54	33.0	3.59e-01	93.7%	77.0%
3vpbE00	2.20.28.160	Mainly Beta › Single Sheet › Rubrerythrin, domain 2 ›	0.52	31.0	3.61e-01	73.4%	83.9%
3c4sA00	2.30.30.140	Mainly Beta › Roll › SH3 type barrels. ›	0.52	31.0	3.51e-01	98.7%	82.5%
1kaxA02	3.30.30.30	Alpha Beta › 2-Layer Sandwich › Defensin A-like ›	0.52	27.0	3.17e-01	89.9%	70.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3476977	391.1.2.0 ↗	few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related	0.62	31.0	4.12e-01	73.4%	95.0%
3626785	4041.1.1.1 ↗	a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2	0.51	30.0	2.38e-01	98.7%	25.0%
3742613	5.1.4.1 ↗	beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40	0.50	42.0	2.70e-01	98.7%	61.3%
3509892	4041.1.1.1 ↗	a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2	0.50	29.0	2.33e-01	96.2%	25.1%

D2 medium residues 137-220

PDB

Domain cluster: rep: unknown_similar_to_AMEV109__YP_008003671__Mythimna_separata_entomopoxvirus_L__1293572__D112-193

D3 medium residues 227-259_289-312

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2qenA03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	34.0	3.12e-01	73.7%	51.4%
2pexA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	45.0	3.50e-01	100.0%	86.8%
1lnwF01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	43.0	3.45e-01	98.2%	100.0%
1yjgA00	1.20.120.240	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6	0.51	40.0	2.97e-01	94.7%	32.5%
1i27A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.51	31.0	2.96e-01	100.0%	47.9%
3szpA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.50	32.0	2.79e-01	87.7%	41.6%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3968802	3831.1.1.1 ↗	alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › LprI	0.59	45.0	3.75e-01	94.7%	48.0%
1722503	101.1.2.129 ↗	alpha arrays › HTH › HTH › winged helix domain › BpuJI_N	0.58	40.0	3.09e-01	98.2%	32.0%
3618490	101.1.2.416 ↗	alpha arrays › HTH › HTH › winged helix domain › WH_Egal	0.56	36.0	3.01e-01	94.7%	38.9%
4361463	101.19.1.1 ↗	alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › HemN_C	0.53	35.0	2.99e-01	70.2%	80.0%

D4 medium residues 313-344_392-421_489-512

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2xgrA00	3.40.570.10	Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A	0.69	53.0	4.03e-01	81.4%	83.8%

D5 medium residues 345-391_422-488

PDB

Domain cluster: rep: hypothetical_protein_PsunGV_gp021__YP_003422360__Pseudalatia_unipuncta_granulovirus__36355__D294-329_399-485

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1ql0A00	3.40.570.10	Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A	0.66	59.0	4.61e-01	97.4%	84.2%
2xgrA00	3.40.570.10	Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A	0.66	60.0	4.93e-01	97.4%	70.1%
4a1nA01	3.40.570.10	Alpha Beta › 3-Layer(aba) Sandwich › Extracellular Endonuclease; Chain A › Extracellular Endonuclease, subunit A	0.64	56.0	4.42e-01	97.4%	87.5%
3icyA00	3.30.450.20	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain	0.62	29.0	2.89e-01	81.6%	39.8%
3vhxF00	2.60.40.4330	Mainly Beta › Sandwich › Immunoglobulin-like › Kinesin-like protein Kif23, Arf6-interacting domain	0.60	32.0	3.36e-01	90.4%	56.9%
2f4lA02	2.40.10.120	Mainly Beta › Beta Barrel › Thrombin, subunit H ›	0.59	24.0	3.40e-01	75.4%	86.0%
2n8xA00	3.30.160.150	Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain	0.57	35.0	3.03e-01	93.9%	41.6%
2uvaG09	2.40.128.700	Mainly Beta › Beta Barrel › Lipocalin ›	0.56	37.0	3.76e-01	85.1%	66.4%
3zh5A00	2.40.128.710	Mainly Beta › Beta Barrel › Lipocalin › Surface-adhesin protein E	0.53	30.0	2.85e-01	91.2%	47.0%
1i2kA01	3.30.470.10	Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain	0.52	38.0	3.91e-01	80.7%	80.6%
2w4yA00	2.40.160.220	Mainly Beta › Beta Barrel › Porin ›	0.51	35.0	3.42e-01	95.6%	64.8%
3fruA01	3.30.500.10	Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like	0.51	41.0	3.62e-01	88.6%	78.0%

ECOD (7)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3470080	319.1.1.1 ↗	beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20	0.69	30.0	3.53e-01	82.5%	57.0%
3739928	378.1.1.1 ↗	few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS	0.62	54.0	4.20e-01	96.5%	83.8%
4973090	330.2.1.0 ↗	a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue)	0.61	31.0	3.36e-01	85.1%	55.0%
3594422	295.1.1.0 ↗	a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain	0.60	32.0	2.77e-01	84.2%	32.6%
3478271	922.1.1.0 ↗	few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat	0.59	33.0	4.21e-01	80.7%	96.9%
3607858	330.1.1.0 ↗	a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like	0.58	30.0	3.21e-01	93.0%	55.2%
3596422	2004.1.1.250 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd	0.51	40.0	2.72e-01	86.8%	47.1%