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ORF129
Euk-VirLymantria_xylina_nucleopolyhedrovirus
ORF129__YP_003517869__Lymantria_xylina_nucleopolyhedrovirus__166921
Identity
- Accession:
- YP_003517869 ↗
- Protein ID:
- ORF129
- Kingdom:
- euk
Quality
75.1
mean pLDDT
Taxonomy
TaxID: 166921
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 103-186
Domain cluster:
rep: masp6.10_like_protein__YP_009552263__Malacosoma_neustria_nucleopolyhedrovirus__38012__D102-186
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27725.1 best | SfNPV_sf27 | 68.5 | 1.00e-18 | 95.2% | 48.0% |
CATH (41)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1lxjA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.75 | 55.0 | 5.16e-01 | 90.5% | 63.1% |
| 2i8eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.74 | 49.0 | 5.15e-01 | 90.5% | 77.0% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.73 | 44.0 | 4.78e-01 | 86.9% | 72.5% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.72 | 43.0 | 4.71e-01 | 86.9% | 74.6% |
| 2fwrA01 | 3.40.1170.30 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › | 0.70 | 41.0 | 4.79e-01 | 100.0% | 86.0% |
| 1ir6A02 | 3.10.310.30 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › | 0.67 | 52.0 | 4.52e-01 | 100.0% | 54.3% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 49.0 | 4.71e-01 | 90.5% | 68.4% |
| 2fjlA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 41.0 | 3.35e-01 | 98.8% | 36.0% |
| 1d1rA00 | 3.30.780.10 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain | 0.64 | 51.0 | 5.16e-01 | 97.6% | 86.7% |
| 1xmxA03 | 1.10.10.680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Hypothetical protein VC1899 (Restriction endonuclease-like) | 0.64 | 45.0 | 4.51e-01 | 88.1% | 70.8% |
| 2v8hA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 50.0 | 4.52e-01 | 89.3% | 82.8% |
| 1zhvA00 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.61 | 54.0 | 4.64e-01 | 97.6% | 91.0% |
| 3fm8D03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.60 | 39.0 | 3.58e-01 | 100.0% | 51.9% |
| 1oltA02 | 1.10.10.920 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.59 | 50.0 | 5.13e-01 | 98.8% | 98.8% |
| 3k17A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.58 | 48.0 | 3.99e-01 | 88.1% | 94.3% |
| 4ncbA02 | 3.30.70.2620 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 4.20e-01 | 86.9% | 80.3% |
| 3k4oA00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.58 | 40.0 | 2.87e-01 | 72.6% | 93.1% |
| 2wp7A00 | 3.90.1720.30 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › PPPDE domains | 0.57 | 48.0 | 3.94e-01 | 98.8% | 49.4% |
| 1t94B02 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.57 | 46.0 | 4.13e-01 | 88.1% | 74.8% |
| 3ihlB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 39.0 | 2.89e-01 | 70.2% | 98.7% |
| 1kjwA03 | 3.30.63.10 | Alpha Beta › 2-Layer Sandwich › Guanylate Kinase phosphate binding domain › Guanylate Kinase phosphate binding domain | 0.56 | 36.0 | 3.95e-01 | 78.6% | 88.5% |
| 4anjA06 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 44.0 | 4.03e-01 | 90.5% | 70.8% |
| 3dv8A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 41.0 | 4.22e-01 | 95.2% | 88.5% |
| 2gauA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 44.0 | 4.45e-01 | 92.9% | 93.8% |
| 6ui4A03 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 43.0 | 4.31e-01 | 89.3% | 91.9% |
| 2fnaA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 4.13e-01 | 85.7% | 90.4% |
| 5cvrA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 45.0 | 4.51e-01 | 97.6% | 94.0% |
| 4ev0A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 4.34e-01 | 91.7% | 93.5% |
| 2cw7A02 | 1.10.10.1010 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Intein homing endonuclease, domain IV | 0.53 | 36.0 | 3.10e-01 | 97.6% | 40.4% |
| 3b02A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 42.0 | 4.21e-01 | 91.7% | 87.1% |
| 1e94A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 37.0 | 2.98e-01 | 72.6% | 93.7% |
| 1r7jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.66e-01 | 85.7% | 70.0% |
| 6qdjA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 41.0 | 4.28e-01 | 88.1% | 96.1% |
| 4byfA01 | 1.20.5.4820 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 41.0 | 4.10e-01 | 89.3% | 85.6% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.48e-01 | 86.9% | 64.2% |
| 2cw8A03 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 44.0 | 3.56e-01 | 97.6% | 88.8% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 28.0 | 3.32e-01 | 90.5% | 76.7% |
| 5optn00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 4.01e-01 | 92.9% | 82.8% |
| 2h6bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 43.0 | 4.20e-01 | 97.6% | 89.6% |
| 1fnnB03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 42.0 | 4.00e-01 | 97.6% | 84.5% |
| 5xyiK00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 39.0 | 3.87e-01 | 89.3% | 81.1% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5293 | 304.22.1.1 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain › UreE_C | 0.73 | 44.0 | 4.81e-01 | 86.9% | 73.5% |
| 4407103 | 327.16.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system | 0.73 | 48.0 | 5.51e-01 | 86.9% | 93.3% |
| 4946311 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.73 | 49.0 | 5.21e-01 | 88.1% | 78.7% |
| 5033078 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.68 | 50.0 | 5.43e-01 | 89.3% | 92.9% |
| 3946107 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.67 | 59.0 | 5.75e-01 | 100.0% | 97.9% |
| 3285236 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.65 | 45.0 | 5.07e-01 | 92.9% | 100.0% |
| 4362064 | 304.117.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC | 0.65 | 42.0 | 4.52e-01 | 88.1% | 78.6% |
| 3597677 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.64 | 56.0 | 5.28e-01 | 100.0% | 93.3% |
| 4357399 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.64 | 43.0 | 4.66e-01 | 88.1% | 82.9% |
| 5082595 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.64 | 46.0 | 5.08e-01 | 89.3% | 98.5% |
| 3613416 | 821.1.1.3 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 | 0.64 | 56.0 | 5.02e-01 | 100.0% | 82.5% |
| 4954582 | 3860.1.1.0 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm | 0.63 | 45.0 | 3.91e-01 | 90.5% | 47.4% |
| 4270095 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.63 | 42.0 | 4.56e-01 | 89.3% | 84.3% |
| 4965407 | 304.8.1.10 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 | 0.62 | 43.0 | 4.84e-01 | 84.5% | 100.0% |
| 5046209 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 55.0 | 5.51e-01 | 100.0% | 100.0% |
| 5000489 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.61 | 55.0 | 4.90e-01 | 97.6% | 79.1% |
| 5043707 | 304.120.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI | 0.61 | 45.0 | 4.88e-01 | 85.7% | 95.7% |
| 4979800 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.61 | 50.0 | 3.48e-01 | 92.9% | 74.0% |
| 4971513 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.60 | 44.0 | 4.68e-01 | 90.5% | 92.9% |
| 1175529 | 101.1.2.142 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 | 0.57 | 43.0 | 4.38e-01 | 92.9% | 85.4% |
| 4992586 | 101.1.2.181 ↗ | alpha arrays › HTH › HTH › winged helix domain › MCM_C | 0.55 | 40.0 | 4.32e-01 | 84.5% | 98.5% |
| 4033416 | 304.117.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in YebC › Ferredoxin-like domain in YebC › Transcrip_reg | 0.55 | 36.0 | 3.91e-01 | 88.1% | 81.4% |
| 5027420 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.55 | 40.0 | 2.65e-01 | 77.4% | 27.4% |
| 3984604 | 7558.1.1.10 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C | 0.55 | 44.0 | 4.29e-01 | 90.5% | 89.5% |
| 4997864 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 40.0 | 3.69e-01 | 95.2% | 60.6% |
| 3731120 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 39.0 | 3.51e-01 | 75.0% | 57.4% |
| 5052446 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 35.0 | 3.21e-01 | 79.8% | 48.7% |
| 3282607 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 3.52e-01 | 86.9% | 53.6% |
| 4996888 | 101.1.2.30 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrmB | 0.53 | 35.0 | 3.30e-01 | 83.3% | 52.7% |
| 4402383 | 3860.1.1.260 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Myosin_head, IQ, Myosin_tail_1 | 0.53 | 40.0 | 3.07e-01 | 84.5% | 34.1% |
| 5003653 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.88e-01 | 98.8% | 75.6% |
| 4201703 | 3860.1.1.131 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › Myosin_head | 0.53 | 43.0 | 2.68e-01 | 90.5% | 15.7% |
| 3579230 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.52 | 42.0 | 2.91e-01 | 90.5% | 23.8% |
| 3165017 | 101.1.2.142 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 | 0.52 | 43.0 | 4.24e-01 | 91.7% | 86.7% |
| 3931789 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.52 | 42.0 | 2.47e-01 | 88.1% | 85.6% |
| 3284560 | 3016.1.1.19 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › KYNU_C | 0.52 | 43.0 | 4.29e-01 | 92.9% | 95.6% |
| 3334152 | 62.1.1.1 ↗ | beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase | 0.52 | 41.0 | 3.26e-01 | 85.7% | 50.6% |
| 3738490 | 327.11.2.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) | 0.52 | 43.0 | 3.90e-01 | 92.9% | 100.0% |
| 3180751 | 101.1.9.90 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › NOL10_2nd | 0.51 | 31.0 | 3.52e-01 | 85.7% | 89.1% |
| 3545258 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.51 | 42.0 | 2.53e-01 | 94.0% | 84.1% |
| 3271085 | 2004.1.1.17 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Myosin_head | 0.50 | 41.0 | 2.44e-01 | 92.9% | 84.0% |
D2
medium
residues 41-100
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF27725.1 best | SfNPV_sf27 | 59.2 | 7.30e-16 | 100.0% | 36.7% |