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ORF143b
Euk-VirSpodoptera_frugiperda_granulovirus
ORF143b__YP_009121929__Spodoptera_frugiperda_granulovirus__307454
Identity
- Accession:
- YP_009121929 ↗
- Protein ID:
- ORF143b
- Kingdom:
- euk
Quality
69.9
mean pLDDT
Taxonomy
TaxID: 307454
Cluster
View cluster (19 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 132-188
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 56.0 | 4.78e-01 | 100.0% | 82.8% |
| 2byeA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.61 | 47.0 | 3.96e-01 | 100.0% | 48.5% |
| 3ephA03 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.59 | 40.0 | 4.10e-01 | 89.5% | 74.1% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 46.0 | 4.02e-01 | 100.0% | 55.4% |
| 3al5B01 | 2.60.120.650 | Mainly Beta › Sandwich › Jelly Rolls › Cupin | 0.58 | 47.0 | 3.05e-01 | 100.0% | 19.8% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 46.0 | 3.99e-01 | 100.0% | 76.9% |
| 1b33N01 | 3.30.1490.170 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Allophycocyanin linker chain (domain) | 0.56 | 46.0 | 4.72e-01 | 100.0% | 94.5% |
| 4r7eA00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 36.0 | 3.41e-01 | 100.0% | 58.0% |
| 2cuiA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 38.0 | 3.24e-01 | 100.0% | 45.5% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3607639 | 10.12.1.9 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › JmjC | 0.65 | 51.0 | 3.12e-01 | 100.0% | 13.2% |
| 4151900 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.59 | 44.0 | 3.39e-01 | 100.0% | 33.3% |
| 5000883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.58 | 46.0 | 4.88e-01 | 98.2% | 98.0% |
| 3225382 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.57 | 38.0 | 3.65e-01 | 100.0% | 60.0% |
| 3196868 | 378.1.1.9 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 | 0.56 | 42.0 | 3.23e-01 | 80.7% | 85.2% |
| 2794904 | 807.1.1.1 ↗ | a+b two layers › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › Allophycocyanin linker chain (domain) › CpcD | 0.55 | 45.0 | 4.32e-01 | 100.0% | 78.8% |
| 4981952 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.55 | 42.0 | 4.42e-01 | 100.0% | 94.0% |
| 3489373 | 386.1.1.40 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf_ZIC | 0.54 | 42.0 | 4.11e-01 | 94.7% | 80.0% |
| 5035786 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.52 | 41.0 | 4.33e-01 | 100.0% | 98.0% |
| 4950851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.52 | 38.0 | 4.05e-01 | 94.7% | 97.8% |
| 4304538 | 2003.1.5.5 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 | 0.52 | 39.0 | 2.58e-01 | 87.7% | 25.8% |
| 5028408 | 4076.3.1.5 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C | 0.52 | 41.0 | 4.28e-01 | 100.0% | 98.0% |
| 3307960 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.52 | 40.0 | 2.81e-01 | 91.2% | 54.7% |
| 4109532 | 304.9.1.178 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › SET_assoc, SET1_RBD | 0.51 | 44.0 | 2.88e-01 | 100.0% | 27.7% |
| 4230268 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.51 | 37.0 | 4.02e-01 | 94.7% | 97.8% |
| 5050527 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 35.0 | 3.80e-01 | 100.0% | 93.3% |
| 4946969 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.50 | 39.0 | 4.17e-01 | 100.0% | 100.0% |
D2
medium
residues 1-56
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ptfB02 | 1.20.58.290 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. | 0.63 | 47.0 | 4.75e-01 | 80.4% | 82.5% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.62 | 44.0 | 4.33e-01 | 76.8% | 84.1% |
| 3ne5B04 | 6.10.140.730 | Special › Helix non-globular › Helix Hairpins › | 0.62 | 44.0 | 4.59e-01 | 75.0% | 96.1% |
| 2b5dX02 | 1.20.1430.10 | Mainly Alpha › Up-down Bundle › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase, middle domain | 0.62 | 45.0 | 3.62e-01 | 78.6% | 58.8% |
| 7cunK01 | 3.40.50.10890 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 53.0 | 3.79e-01 | 100.0% | 61.8% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.60 | 42.0 | 3.80e-01 | 75.0% | 100.0% |
| 2oxlA00 | 1.20.5.5260 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.58 | 41.0 | 4.03e-01 | 75.0% | 72.6% |
| 2crbA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 43.0 | 3.67e-01 | 80.4% | 59.8% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 44.0 | 3.73e-01 | 83.9% | 62.4% |
| 2j4bB00 | 1.25.40.500 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain | 0.57 | 46.0 | 3.59e-01 | 94.6% | 64.7% |
| 4b7yD00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 43.0 | 3.67e-01 | 83.9% | 88.7% |
| 1f0jA00 | 1.10.1300.10 | Mainly Alpha › Orthogonal Bundle › Catalytic domain of cyclic nucleotide phosphodiesterase 4b2b › 3'5'-cyclic nucleotide phosphodiesterase, catalytic domain | 0.57 | 46.0 | 2.94e-01 | 100.0% | 54.7% |
| 1o82A00 | 1.20.225.10 | Mainly Alpha › Up-down Bundle › Bacteriocin As-48; Chain A › Bacteriocin AS-48 | 0.56 | 40.0 | 3.76e-01 | 75.0% | 85.7% |
| 3e3vA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 38.0 | 3.84e-01 | 73.2% | 80.4% |
| 3vkgA15 | 1.10.8.1220 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 41.0 | 3.58e-01 | 83.9% | 85.1% |
| 7ktrB01 | 1.25.40.500 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › TFIID subunit TAF5, NTD2 domain | 0.55 | 45.0 | 3.55e-01 | 96.4% | 57.6% |
| 4dxwB01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.54 | 45.0 | 3.75e-01 | 98.2% | 75.2% |
| 4q5nA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 42.0 | 3.57e-01 | 96.4% | 83.0% |
| 3zheD01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.53 | 46.0 | 3.16e-01 | 100.0% | 49.3% |
| 2fupA00 | 1.20.58.300 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › FlgN-like | 0.52 | 43.0 | 3.27e-01 | 91.1% | 78.7% |
| 1hr7C02 | 3.30.830.10 | Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like | 0.51 | 43.0 | 2.92e-01 | 98.2% | 54.7% |
| 2rpaA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 40.0 | 3.73e-01 | 96.4% | 85.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3670388 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.67 | 48.0 | 3.67e-01 | 76.8% | 49.6% |
| 3815026 | 604.1.1.148 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TBCC_N | 0.65 | 48.0 | 4.20e-01 | 80.4% | 78.8% |
| 5012559 | 6028.1.1.0 ↗ | alpha bundles › Ribosome modulation factor › Ribosome modulation factor › Ribosome modulation factor | 0.65 | 48.0 | 4.42e-01 | 82.1% | 77.3% |
| 4572664 | 604.3.1.0 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain | 0.61 | 45.0 | 4.21e-01 | 78.6% | 100.0% |
| 3534466 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.61 | 45.0 | 4.36e-01 | 82.1% | 100.0% |
| 3285241 | 192.29.1.52 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Anthrone_oxy | 0.61 | 43.0 | 3.11e-01 | 75.0% | 69.1% |
| 3358885 | 604.12.1.8 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT | 0.60 | 46.0 | 4.14e-01 | 85.7% | 70.0% |
| 3494078 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 44.0 | 4.22e-01 | 80.4% | 72.3% |
| 3492451 | 101.35.1.18 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › HSD3 | 0.59 | 44.0 | 4.10e-01 | 80.4% | 67.1% |
| 4983683 | 604.12.1.140 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF447_C | 0.58 | 42.0 | 4.06e-01 | 78.6% | 89.2% |
| 3414767 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.57 | 45.0 | 4.02e-01 | 85.7% | 70.0% |
| 3883622 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.57 | 43.0 | 3.98e-01 | 83.9% | 77.3% |
| 3957298 | 604.9.1.1 ↗ | alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p | 0.56 | 48.0 | 4.10e-01 | 96.4% | 76.7% |
| 3884438 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.56 | 42.0 | 3.84e-01 | 83.9% | 72.5% |
| 3986794 | 639.2.1.1 ↗ | alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB | 0.55 | 38.0 | 3.63e-01 | 73.2% | 67.1% |
| 3507780 | 604.12.1.8 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT | 0.54 | 48.0 | 4.17e-01 | 100.0% | 82.4% |
| 3704286 | 604.12.1.8 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT | 0.54 | 48.0 | 3.95e-01 | 100.0% | 70.0% |
| 3963966 | 3355.1.1.15 ↗ | alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › CitMHS_2 | 0.53 | 42.0 | 2.57e-01 | 94.6% | 13.4% |
| 3608758 | 604.12.1.8 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT | 0.53 | 47.0 | 4.18e-01 | 100.0% | 93.8% |
| 3206364 | 109.1.1.11 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › Arc1p_N_like | 0.53 | 46.0 | 3.43e-01 | 100.0% | 46.7% |
| 3788338 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.53 | 46.0 | 4.23e-01 | 100.0% | 97.3% |
| 3186889 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.52 | 44.0 | 3.79e-01 | 98.2% | 69.5% |
| 3879426 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.51 | 42.0 | 3.80e-01 | 98.2% | 83.1% |
| 4933335 | 604.12.1.1 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT | 0.51 | 43.0 | 3.90e-01 | 100.0% | 88.7% |
| 3252144 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.51 | 43.0 | 4.07e-01 | 96.4% | 100.0% |
| 3516214 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.50 | 42.0 | 3.68e-01 | 98.2% | 93.3% |
D3
medium
residues 57-129
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l80D00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.63 | 46.0 | 2.97e-01 | 78.1% | 93.3% |
| 2qwoB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.62 | 50.0 | 4.61e-01 | 86.3% | 98.9% |
| 4cq4B00 | 6.10.340.10 | Special › Helix non-globular › hypothetical protein mp506/mpn330, domain 1 › | 0.60 | 44.0 | 3.94e-01 | 90.4% | 55.9% |
| 2ve7C01 | 1.10.418.60 | Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Ncd80 complex, Nuf2 subunit | 0.55 | 43.0 | 3.27e-01 | 82.2% | 78.7% |
| 4ceiA03 | 6.10.250.2380 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.54 | 38.0 | 3.29e-01 | 72.6% | 89.3% |
| 3ns4A00 | 1.10.357.110 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Vacuolar protein sorting-associated protein 53, C-terminus | 0.54 | 46.0 | 3.38e-01 | 95.9% | 59.5% |
| 4mo7A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 39.0 | 3.15e-01 | 82.2% | 57.0% |
| 1m6nA05 | 1.10.1200.230 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › | 0.51 | 38.0 | 3.69e-01 | 91.8% | 70.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3629045 | 601.2.1.5 ↗ | alpha bundles › Four-helical up-and-down bundle › Cytochromes › Cytochromes › Ctr | 0.64 | 44.0 | 3.72e-01 | 71.2% | 85.6% |
| 3458971 | 212.1.1.34 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFL1 | 0.60 | 46.0 | 3.18e-01 | 83.6% | 29.6% |
| 3642338 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.56 | 32.0 | 3.24e-01 | 75.3% | 57.3% |
| 3710128 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.55 | 45.0 | 3.12e-01 | 90.4% | 64.0% |
| 4538975 | 191.1.1.12 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_8 | 0.52 | 42.0 | 3.68e-01 | 87.7% | 80.0% |
| 3286525 | 4168.1.1.1 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP | 0.51 | 42.0 | 4.10e-01 | 91.8% | 88.7% |
| 5046582 | 3921.1.1.3 ↗ | alpha complex topology › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › Na(+)-translocating NADH-quinone reductase subunit D › GDT1 | 0.51 | 38.0 | 2.94e-01 | 84.9% | 83.2% |