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ORF19

Euk-Vir

Ranid_herpesvirus_2

ORF19__YP_656527__Ranid_herpesvirus_2__389214

Identity

Accession:
YP_656527 ↗
Protein ID:
ORF19
Kingdom:
euk

Quality

66.9 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Alloherpesviridae› Batravirus› Ranid_herpesvirus_2

TaxID: 389214

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-108_127-146
PDB
Domain cluster: rep: ORF13__YP_656521__Ranid_herpesvirus_2__389214__D1-98
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 38.0 4.64e-01 71.1% 87.7%
4hehA01 1.10.1240.10 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain 0.65 29.0 3.41e-01 71.9% 56.6%
4i0xG00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 27.0 3.31e-01 71.1% 67.6%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.59 42.0 4.14e-01 74.6% 91.9%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.59 37.0 4.38e-01 74.6% 92.4%
3umcD02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 35.0 4.12e-01 71.1% 87.2%
16vpA00 1.10.1290.10 Mainly Alpha › Orthogonal Bundle › Conserved core of transcriptional regulatory protein vp16 › Alpha trans-inducing (Alpha-TIF) 0.58 46.0 3.43e-01 86.8% 78.1%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.56 27.0 2.96e-01 71.1% 53.9%
1dkxA02 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.55 33.0 3.83e-01 99.1% 85.0%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 34.0 3.94e-01 75.4% 93.6%
1yisA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.51 34.0 3.60e-01 98.2% 75.7%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 26.0 2.95e-01 73.7% 64.6%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.51 27.0 3.19e-01 84.2% 74.4%
4m70I00 1.20.5.4130 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.50 34.0 3.54e-01 99.1% 73.1%
3m9vA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.50 37.0 3.39e-01 78.1% 87.9%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.50 33.0 3.78e-01 81.6% 94.9%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
149872 3291.1.1.1 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Snf7 0.66 27.0 3.29e-01 70.2% 55.7%
4240705 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.63 41.0 4.64e-01 100.0% 87.1%
3877673 5050.1.1.10 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 0.63 45.0 3.57e-01 74.6% 59.6%
4402843 604.1.1.20 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA 0.62 28.0 2.87e-01 73.7% 41.7%
4805104 601.19.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein 0.61 27.0 3.16e-01 73.7% 55.4%
3257705 632.22.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.57 42.0 4.61e-01 100.0% 92.6%
4316383 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.56 27.0 3.01e-01 70.2% 56.8%
3763723 601.1.2.0 ↗ alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.54 41.0 3.86e-01 79.8% 74.3%
5042381 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.54 41.0 2.92e-01 83.3% 80.3%
4048127 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 29.0 3.40e-01 73.7% 72.9%
3989648 1203.1.2.17 ↗ alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2 › ABC_membrane 0.51 37.0 3.13e-01 76.3% 75.0%
3283630 601.7.1.18 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN_SAV_6107 0.51 40.0 4.06e-01 100.0% 85.5%
3287601 150.5.1.1 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.51 28.0 3.06e-01 73.7% 64.9%
5080288 613.1.1.0 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 0.51 43.0 3.48e-01 94.7% 53.0%
3831795 589.1.2.1 ↗ alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C 0.50 41.0 3.34e-01 86.0% 92.7%
D2 medium residues 147-231
PDB