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ORF1

Euk-Vir

Torque_teno_sus_virus_1b

ORF1__YP_003587901__Torque_teno_sus_virus_1b__687387

Identity

Accession:
YP_003587901 ↗
Protein ID:
ORF1
Kingdom:
euk

Quality

55.7 mean pLDDT

Taxonomy

Shotokuvirae› Commensaviricota› Cardeaviricetes› Sanitavirales› Anelloviridae› Iotatorquevirus› Torque_teno_sus_virus_1b

TaxID: 687387

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 64-162_221-243_483-503
PDB
Domain cluster: rep: hypothetical_protein_TTtaV_gp2__YP_003587880__Torque_teno_tamarin_virus__687382__D74-140_159-191_229-253_527-541
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF02956.21 best TT_ORF1 91.6 6.90e-26 71.3% 16.6%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.64 36.0 3.99e-01 95.8% 69.4%
4fx5A01 2.60.40.3670 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 37.0 3.72e-01 97.2% 58.5%
3w5nA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.60 36.0 3.41e-01 98.6% 49.1%
1c8nC00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 48.0 4.18e-01 98.6% 85.4%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 30.0 3.39e-01 97.2% 70.2%
6jhsA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.74e-01 97.9% 89.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5056540 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.64 36.0 3.78e-01 97.2% 58.5%
4945616 11.1.1.1399 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF553 0.59 37.0 4.14e-01 97.2% 78.3%
4493812 11.1.5.85 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › PFF1_C 0.58 34.0 3.07e-01 95.8% 41.0%
3703177 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 34.0 3.68e-01 98.6% 66.4%
3684969 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.54 31.0 3.47e-01 98.6% 70.4%
3286177 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.54 35.0 3.15e-01 98.6% 47.5%
3720487 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.54 31.0 3.39e-01 98.6% 67.5%
4961734 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.53 32.0 3.63e-01 96.5% 80.0%
3882670 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.52 29.0 3.28e-01 100.0% 70.0%
3922606 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.52 29.0 3.14e-01 100.0% 61.6%
3289166 10.20.1.2 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.52 32.0 3.46e-01 97.9% 71.7%
4936512 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.51 34.0 4.09e-01 95.1% 100.0%
3910789 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.51 29.0 3.20e-01 100.0% 68.7%
5058190 304.133.1.1 ↗ a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.51 37.0 4.19e-01 98.6% 100.0%
3993060 304.47.1.1 ↗ a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.50 29.0 3.18e-01 98.6% 68.3%
D2 medium residues 163-220_244-284_467-482
PDB
D3 medium residues 322-365
PDB