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ORF1
Euk-VirBlueberry_latent_virus
ORF1__YP_003934624__Blueberry_latent_virus__430710
Identity
- Accession:
- YP_003934624 ↗
- Protein ID:
- ORF1
- Kingdom:
- euk
Quality
70.9
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Duplopiviricetes›
Durnavirales›
Amalgaviridae›
Amalgavirus›
Blueberry_latent_virus
TaxID: 430710
Cluster
View cluster (6 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-122
Domain cluster:
rep: putative_fusion_protein__YP_003868436__Rhododendron_virus_A__878260__D37-144
D2
medium
residues 191-285
Domain cluster:
rep: putative_coat_protein__YP_009388305__Spinach_amalgavirus_1__1985164__D195-305
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.66 | 37.0 | 3.44e-01 | 97.9% | 44.7% |
| 1b5lA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.62 | 35.0 | 2.98e-01 | 100.0% | 34.2% |
| 2wdqD00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.56 | 44.0 | 4.24e-01 | 100.0% | 74.3% |
| 152lA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.52 | 36.0 | 3.02e-01 | 70.5% | 43.9% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.52 | 26.0 | 3.03e-01 | 96.8% | 65.6% |
| 2ondA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 40.0 | 2.78e-01 | 100.0% | 26.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3610437 | 3890.1.1.1 ↗ | alpha bundles › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Bax1-I | 0.56 | 38.0 | 2.90e-01 | 100.0% | 31.7% |
| 4059250 | 4076.2.1.0 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like | 0.53 | 46.0 | 4.03e-01 | 92.6% | 93.3% |
| 4928690 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.53 | 40.0 | 2.74e-01 | 83.2% | 95.5% |
| 3647085 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.50 | 36.0 | 2.83e-01 | 73.7% | 82.9% |