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ORF1

Euk-Vir

Canna_yellow_mottle_associated_virus

ORF1__YP_009259696__Canna_yellow_mottle_associated_virus__2560371

Identity

Accession:: YP_009259696 ↗
Protein ID:: ORF1
Kingdom:: euk

Quality

85.9 mean pLDDT

Taxonomy

Pararnavirae› Artverviricota› Revtraviricetes› Ortervirales› Caulimoviridae› Badnavirus› Canna_yellow_mottle_associated_virus

TaxID: 2560371

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-63

PDB

Domain cluster: representative

CATH (23)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2ic6A00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.71	54.0	5.21e-01	82.5%	71.8%
4w4kA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.69	51.0	4.63e-01	77.8%	97.6%
2gtsA00	1.10.287.850	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain	0.68	50.0	4.67e-01	77.8%	64.9%
1st6A03	1.20.120.810	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle	0.67	51.0	3.46e-01	82.5%	22.7%
1wrdA00	1.20.58.160	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.67	55.0	4.76e-01	90.5%	72.4%
4exjA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.67	51.0	4.13e-01	82.5%	47.1%
4iggA01	1.10.287.160	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat	0.67	51.0	5.07e-01	82.5%	77.6%
1f45B00	1.20.1250.10	Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; ›	0.67	55.0	4.39e-01	93.7%	73.7%
2ynqB00	1.25.40.680	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type VII secretion system EssB, C-terminal-like domain	0.67	52.0	3.97e-01	85.7%	36.4%
3fxdB00	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.65	52.0	5.44e-01	85.7%	94.8%
6idxA01	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.65	55.0	3.80e-01	95.2%	45.2%
3bujA00	1.10.630.10	Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450	0.65	48.0	2.95e-01	79.4%	12.6%
1skvA00	1.10.287.660	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin	0.64	51.0	5.16e-01	88.9%	93.8%
5jrcA00	1.20.58.2140	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.64	57.0	4.05e-01	100.0%	81.2%
2ph7A01	1.10.3400.10	Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like	0.63	48.0	3.92e-01	84.1%	62.1%
4a17U01	1.10.287.310	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.63	50.0	4.71e-01	88.9%	71.4%
3besR03	6.10.140.1480	Special › Helix non-globular › Helix Hairpins ›	0.57	43.0	4.51e-01	81.0%	92.9%
3plnA03	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.57	47.0	3.66e-01	96.8%	42.9%
1u9lB00	1.10.150.20	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain	0.57	44.0	4.27e-01	82.5%	97.1%
2d9dA00	1.20.58.120	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain	0.56	46.0	4.19e-01	95.2%	71.9%
2y0eB03	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.55	45.0	3.19e-01	96.8%	32.0%
4r16A02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.54	44.0	3.25e-01	96.8%	34.9%
3s6jE02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.51	41.0	3.97e-01	85.7%	88.4%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3250737	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.68	48.0	3.97e-01	79.4%	42.7%
5008040	101.1.2.951 ↗	alpha arrays › HTH › HTH › winged helix domain › PF29259	0.65	54.0	4.40e-01	95.2%	67.2%
4089826	622.1.1.33 ↗	alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › T3SS_needle_F	0.64	56.0	5.02e-01	95.2%	87.1%
4947298	4323.1.1.1 ↗	alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I	0.63	51.0	4.13e-01	90.5%	66.4%
4370327	2004.1.1.433 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23	0.61	51.0	3.14e-01	93.7%	26.8%
3934503	614.1.1.1 ↗	alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27	0.59	38.0	4.13e-01	73.0%	80.0%
3534511	11.2.1.0 ↗	beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain	0.59	50.0	3.75e-01	95.2%	43.1%
3663990	192.8.1.0 ↗	alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain	0.56	48.0	4.67e-01	98.4%	100.0%

D2 medium residues 64-122

PDB

Domain cluster: representative

D3 medium residues 123-173

PDB

Domain cluster: rep: hypothetical_protein__NP_777315__Kalanchoe_top-spotting_virus__218387__D123-173

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF07028.17 best	DUF1319	45.3	1.30e-11	74.5%	34.9%