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ORF1

Euk-Vir

Wuhan_House_Fly_Virus_2

ORF1__YP_009304981__Wuhan_House_Fly_Virus_2__1608105

Identity

Accession:: YP_009304981 ↗
Protein ID:: ORF1
Kingdom:: euk

Quality

72.5 mean pLDDT

Taxonomy

Orthornavirae› Negarnaviricota› Monjiviricetes› Mononegavirales› Rhabdoviridae› Alphadrosrhavirus› Wuhan_House_Fly_Virus_2

TaxID: 1608105

Cluster

View cluster (144 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 66-127_187-322

PDB

Domain cluster: rep: N_protein__YP_010086409__Maize_yellow_striate_virus__1168550__D39-103_154-262

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1wp9B03	1.20.1320.20	Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain	0.58	30.0	3.63e-01	71.7%	73.1%
2xppA00	1.20.930.10	Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	0.58	35.0	4.04e-01	100.0%	83.9%
4wz9A04	1.25.50.20	Mainly Alpha › Alpha Horseshoe › Zincin-like fold ›	0.56	33.0	2.85e-01	100.0%	34.4%
4i2zA02	1.25.10.10	Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant	0.55	39.0	3.17e-01	98.5%	38.3%
4iv6B01	1.10.540.10	Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain	0.52	26.0	3.28e-01	86.4%	77.6%
4fz4A00	1.20.140.130	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.51	35.0	3.90e-01	99.0%	87.7%
2a2fX02	1.20.58.670	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dsl1p vesicle tethering complex, Tip20p subunit, domain D	0.51	29.0	3.52e-01	87.4%	84.5%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5000477	138.1.1.2 ↗	alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › Rep_fac_C	0.67	25.0	3.48e-01	71.7%	66.0%
3993870	109.40.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › DNA polymerase alpha-binding protein Ctf4 C-terminal domain › DNA polymerase alpha-binding protein Ctf4 C-terminal domain	0.61	35.0	4.37e-01	98.0%	91.7%
3845802	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.55	37.0	3.53e-01	100.0%	57.0%
3743512	630.1.1.0 ↗	a+b complex topology › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain › RuBisCo LSMT C-terminal, substrate-binding domain	0.54	28.0	3.06e-01	95.5%	57.6%
3477026	168.1.1.1 ↗	alpha arrays › Sec7 domain › Sec7 domain › Sec7 domain › Sec7	0.52	34.0	4.06e-01	79.8%	99.2%
3236976	174.1.1.0 ↗	few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain	0.50	34.0	3.84e-01	85.4%	89.3%

D2 high residues 327-476

PDB

Domain cluster: rep: nucleocapsid_protein__YP_010087150__Cytorhabdovirus_caricae__2364291__D277-416_434-447

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03216.19 best	Rhabdo_ncap_2	28.1	1.80e-06	62.0%	25.1%

CATH (15)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2gicD02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.70	61.0	5.58e-01	92.7%	79.0%
2gttJ02	1.10.3610.10	Mainly Alpha › Orthogonal Bundle › Rhabdovirus nucleoprotein-like › Nucleoprotein	0.69	61.0	5.56e-01	92.7%	78.9%
1c5aA00	1.20.91.20	Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system)	0.62	27.0	3.92e-01	72.0%	90.8%
5wt3A01	3.30.70.2580	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.58	25.0	3.60e-01	98.0%	89.2%
2mzwA01	3.30.70.870	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3	0.57	19.0	2.67e-01	100.0%	56.6%
2a3qA00	1.10.287.1080	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like	0.57	27.0	3.04e-01	71.3%	54.9%
2uuiA00	1.20.120.550	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain	0.54	28.0	2.81e-01	75.3%	47.7%
2hvzA01	3.30.70.330	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain	0.53	25.0	3.40e-01	87.3%	88.9%
3tacB02	1.10.150.50	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1	0.53	29.0	3.75e-01	82.0%	98.8%
4l7aA00	3.40.390.70	Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) ›	0.52	37.0	3.08e-01	86.7%	41.8%
4r8zA00	1.10.3210.10	Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432	0.51	40.0	3.58e-01	82.0%	90.4%
3bvxA02	1.20.1270.50	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain	0.51	30.0	3.38e-01	84.0%	75.7%
1rykA00	1.10.1470.10	Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ	0.50	20.0	2.88e-01	100.0%	78.3%
2wb7A03	1.20.120.870	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › pT26-6p, five-helical bundle domain	0.50	29.0	3.05e-01	72.7%	60.3%
3pg5A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.50	42.0	3.45e-01	93.3%	96.3%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3284449	142.1.1.3 ↗	alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › Sigma70_r2	0.51	25.0	3.18e-01	90.0%	78.8%