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ORF1

Euk-Vir

Lake_Sinai_Virus_SA2

ORF1__YP_009388490__Lake_Sinai_Virus_SA2__1983563

Identity

Accession:
YP_009388490 ↗
Protein ID:
ORF1
Kingdom:
euk

Quality

54.7 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Magsaviricetes› Nodamuvirales› Sinhaliviridae› Sinaivirus› Lake_Sinai_Virus_SA2

TaxID: 1983563

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 190-375
PDB
Domain cluster: rep: uncovered_polypeptide_polyprotein__YP_001086452_0-758__Chrysanthemum_virus_B__12165__D72-292
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF19223.6 best Chropara_Vmeth 145.0 4.00e-42 100.0% 60.1%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 26.0 3.57e-01 94.6% 82.3%
2b5iB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 20.0 2.73e-01 83.3% 59.6%
2di7A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 23.0 3.02e-01 83.9% 66.4%
1m0wA04 3.40.50.1760 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic 0.53 36.0 4.29e-01 82.3% 100.0%
2egvA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.52 19.0 3.07e-01 83.3% 89.4%
2va0A00 3.30.450.160 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 24.0 3.06e-01 72.6% 74.7%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 19.0 2.75e-01 92.5% 72.2%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3017364 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.72 66.0 5.86e-01 98.9% 91.0%
9393 2003.1.5.151 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.72 66.0 6.00e-01 98.9% 96.7%
3989865 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.71 64.0 5.86e-01 96.8% 96.7%
3290078 321.4.1.0 ↗ a+b two layers › Glutamine synthetase-like › Methyltransferase type 12 N-terminal domain › Methyltransferase type 12 N-terminal domain 0.70 65.0 4.71e-01 97.3% 44.0%
1780023 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 26.0 3.64e-01 90.3% 83.9%
4883459 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.58 24.0 3.69e-01 96.8% 92.3%
5053654 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 25.0 3.00e-01 97.8% 57.5%
5075723 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 25.0 2.99e-01 97.8% 60.0%
3968427 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 27.0 3.03e-01 97.3% 58.0%
3387865 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 25.0 3.43e-01 92.5% 84.2%
3971124 223.1.1.58 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › 2CSK_N 0.54 26.0 3.34e-01 96.2% 75.7%
4047545 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 29.0 3.19e-01 97.3% 63.9%
2774000 881.4.1.1 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.52 26.0 3.37e-01 94.1% 84.5%
4295277 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 24.0 2.67e-01 94.1% 52.0%
3286935 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 27.0 3.70e-01 91.9% 100.0%
4947650 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 24.0 2.91e-01 98.4% 65.2%
3386292 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.50 24.0 3.18e-01 90.3% 81.0%
D2 high residues 696-839
PDB
D3 medium residues 22-151
PDB
D4 medium residues 376-491
PDB
D5 medium residues 492-548
PDB