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ORF1
Euk-VirTorque_teno_midi_virus_4
ORF1__YP_009505753__Torque_teno_midi_virus_4__2065045
Identity
- Accession:
- YP_009505753 ↗
- Protein ID:
- ORF1
- Kingdom:
- euk
Quality
78.5
mean pLDDT
Taxonomy
Shotokuvirae›
Commensaviricota›
Cardeaviricetes›
Sanitavirales›
Anelloviridae›
Gammatorquevirus›
Torque_teno_midi_virus_4
TaxID: 2065045
Cluster
View cluster (37 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 70-243_486-508_534-541
Domain cluster:
rep: capsid__YP_009551495__Molossus_molossus_circovirus_3__1959844__D38-102_119-228
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02956.21 best | TT_ORF1 | 249.6 | 9.10e-74 | 86.8% | 33.1% |
D2
medium
residues 250-264_349-481
Domain cluster:
rep: ORF1__YP_009505738__Torque_teno_mini_virus_11__2065037__D379-509
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02956.21 best | TT_ORF1 | 116.3 | 2.40e-33 | 99.3% | 26.9% |
D3
medium
residues 265-348
Domain cluster:
rep: hypothetical_protein__YP_009505774__Torque_teno_midi_virus_9__2065050__D268-336
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.55 | 38.0 | 3.98e-01 | 76.2% | 80.3% |
| 5ee2A00 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.54 | 38.0 | 3.41e-01 | 75.0% | 100.0% |
| 4ybnB00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 40.0 | 3.01e-01 | 81.0% | 61.5% |
| 3m1cA04 | 2.60.40.3190 | Mainly Beta › Sandwich › Immunoglobulin-like › Herpesvirus glycoprotein H, C-terminal domain | 0.51 | 38.0 | 3.35e-01 | 100.0% | 52.3% |
| 1wfjA01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.51 | 40.0 | 3.55e-01 | 85.7% | 84.7% |
| 2lp6A00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.50 | 36.0 | 3.54e-01 | 88.1% | 70.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5046334 | 4027.1.1.0 ↗ | beta barrels › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit › all-beta domain in DNA topoisomerase IV alpha subunit | 0.60 | 34.0 | 4.09e-01 | 90.5% | 92.0% |
| 3611121 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 36.0 | 2.61e-01 | 77.4% | 21.3% |
| 5025771 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 41.0 | 3.99e-01 | 83.3% | 91.6% |
| 3449628 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.51 | 39.0 | 3.53e-01 | 82.1% | 63.5% |
| 4937059 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.51 | 36.0 | 3.83e-01 | 85.7% | 88.6% |
| 4024940 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.51 | 40.0 | 3.24e-01 | 86.9% | 82.4% |
| 3529995 | 226.1.1.4 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › BTB_2 | 0.50 | 33.0 | 2.99e-01 | 83.3% | 47.8% |