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ORF1

Euk-Vir

Varroa_destructor_virus_3_Viruses.

ORF1__YP_009551338__Varroa_destructor_virus_3_Viruses.__X

Identity

Accession:
YP_009551338 ↗
Protein ID:
ORF1
Kingdom:
euk

Quality

57.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-68
PDB
D2 medium residues 69-88_179-293
PDB
Domain cluster: rep: ORF1a__YP_009047079__Human_astrovirus_BF34__1518575__D522-618
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1mbmA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.84 43.0 5.89e-01 80.7% 94.4%
1zyoA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.82 60.0 6.86e-01 77.8% 100.0%
1agjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.80 55.0 5.61e-01 71.1% 90.3%
1p3cA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.79 57.0 6.42e-01 73.3% 100.0%
2as9B01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 55.0 6.36e-01 78.5% 97.0%
1wczA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.78 61.0 6.59e-01 81.5% 95.7%
4ri0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.77 58.0 5.05e-01 77.8% 94.9%
2ijd101 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.75 52.0 4.71e-01 71.1% 98.3%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.73 54.0 6.16e-01 79.3% 100.0%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.73 59.0 5.07e-01 84.4% 95.1%
3l6pA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.62 44.0 4.93e-01 72.6% 93.3%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.81 64.0 5.36e-01 81.5% 97.7%
5063379 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.81 58.0 5.17e-01 72.6% 98.9%
2526961 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.81 64.0 5.36e-01 82.2% 96.8%
None — 0.81 64.0 5.34e-01 81.5% 97.7%
3443107 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.81 63.0 5.21e-01 80.7% 92.0%
4387060 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.80 61.0 5.14e-01 78.5% 94.4%
3436414 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.80 63.0 5.30e-01 80.7% 99.0%
None — 0.80 61.0 5.17e-01 78.5% 96.7%
None — 0.80 63.0 5.32e-01 81.5% 97.7%
1096110 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.80 63.0 5.29e-01 81.5% 97.7%
3448847 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.80 57.0 4.43e-01 73.3% 95.3%
2472950 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.80 58.0 5.16e-01 74.8% 100.0%
3962616 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 57.0 5.19e-01 72.6% 84.1%
5063188 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.80 57.0 4.75e-01 72.6% 87.9%
3989070 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.80 59.0 4.94e-01 76.3% 100.0%
4247805 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.80 61.0 5.15e-01 79.3% 95.7%
5037776 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.79 55.0 4.55e-01 70.4% 47.3%
4031177 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.79 61.0 5.11e-01 79.3% 94.9%
5072499 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.78 59.0 5.06e-01 77.0% 95.5%
3417330 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.78 58.0 4.92e-01 77.0% 96.3%
3437290 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.78 61.0 5.10e-01 80.7% 99.5%
3611892 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.78 59.0 5.14e-01 77.8% 98.9%
4022015 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.78 56.0 4.50e-01 74.1% 80.0%
3449628 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.77 56.0 6.03e-01 81.5% 87.8%
4822902 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.75 53.0 5.00e-01 71.9% 80.4%
3220497 1.1.17.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 0.75 53.0 4.45e-01 72.6% 89.5%
3672433 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.75 63.0 4.80e-01 88.1% 84.8%
3447771 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.74 54.0 4.37e-01 74.8% 90.8%
3443528 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.73 62.0 5.22e-01 88.9% 100.0%
3377696 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.73 54.0 4.69e-01 76.3% 98.0%
3464880 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.73 59.0 5.00e-01 84.4% 93.5%
3510929 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.73 54.0 4.30e-01 76.3% 92.7%
3598734 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 50.0 4.15e-01 72.6% 89.4%
3415399 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.71 61.0 5.17e-01 91.1% 97.7%
3462061 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 60.0 5.03e-01 88.9% 98.6%
3434538 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.71 60.0 5.05e-01 88.9% 99.1%
3615787 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.71 51.0 4.28e-01 74.8% 67.6%
3447254 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 61.0 5.06e-01 91.1% 98.2%
4028981 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.70 59.0 4.92e-01 88.1% 96.4%
2779726 1.1.17.2 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_C3 0.70 53.0 4.70e-01 78.5% 100.0%
3276425 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.69 60.0 4.62e-01 91.9% 94.1%
2142060 1.1.5.22 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S32 0.69 50.0 4.30e-01 74.1% 74.3%
3428386 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.69 64.0 5.14e-01 99.3% 94.4%
3244773 1.1.5.49 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF316 0.68 57.0 4.50e-01 88.1% 90.0%
3433009 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.67 61.0 4.88e-01 97.0% 87.5%
1308507 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.65 55.0 4.90e-01 88.9% 95.2%
D3 medium residues 89-178_334-364
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.76 55.0 6.16e-01 74.4% 97.9%
1m9uA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.69 50.0 5.26e-01 74.4% 89.0%
3tvjB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 49.0 5.18e-01 74.4% 86.0%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 43.0 4.17e-01 71.9% 85.4%
4ri0A01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.61 51.0 4.27e-01 87.6% 65.7%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 42.0 4.18e-01 71.9% 85.2%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 41.0 4.13e-01 74.4% 83.6%
2gk6A02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.57 37.0 4.28e-01 74.4% 95.2%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 37.0 4.10e-01 71.1% 88.3%
2hrvA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 37.0 4.13e-01 70.2% 89.5%
1bf2A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.65e-01 76.9% 87.0%
4uhvA01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.53 38.0 3.31e-01 74.4% 84.6%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.51 25.0 3.13e-01 73.6% 76.1%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3269940 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.75 62.0 4.61e-01 86.0% 57.1%
3597134 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.73 61.0 4.51e-01 87.6% 75.9%
3838513 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 52.0 4.17e-01 77.7% 72.3%
5061011 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.69 56.0 4.32e-01 87.6% 68.5%
3394133 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.65 56.0 4.43e-01 89.3% 50.2%
185005 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.63 53.0 3.97e-01 88.4% 76.4%
3398447 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.62 52.0 3.93e-01 89.3% 45.6%
3234434 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.62 53.0 4.02e-01 90.9% 53.7%
3890483 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 48.0 3.79e-01 84.3% 48.6%
3375203 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.60 49.0 3.78e-01 87.6% 56.7%
3399384 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.60 50.0 3.89e-01 89.3% 51.2%
3406384 1.1.17.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin 0.59 50.0 3.88e-01 89.3% 49.4%
3988584 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 24.0 2.66e-01 71.1% 45.0%
4588452 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.56 25.0 3.24e-01 72.7% 72.9%
4181458 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.55 40.0 4.23e-01 76.0% 95.5%
3324420 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.55 39.0 4.07e-01 72.7% 90.0%
5072499 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.54 45.0 3.77e-01 87.6% 66.5%
5014046 11.1.1.949 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28476 0.54 39.0 4.16e-01 75.2% 93.3%
3680041 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.54 40.0 3.92e-01 76.9% 77.7%
3835816 11.1.1.122 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.53 37.0 3.92e-01 72.7% 90.9%
2606543 11.42.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › beta-xylosidase (XylC) insertion domain › beta-xylosidase (XylC) insertion domain › GH141_M 0.52 41.0 3.62e-01 86.0% 79.6%
5041380 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.51 37.0 3.19e-01 74.4% 89.2%
3416722 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.50 30.0 3.47e-01 71.9% 86.3%