←Back to structures

ORF1

Euk-Vir

Penicillium_janczewskii_chrysovirus_2

ORF1__YP_009667018__Penicillium_janczewskii_chrysovirus_2__1755793

Identity

Accession:: YP_009667018 ↗
Protein ID:: ORF1
Kingdom:: euk

Quality

77.7 mean pLDDT

Taxonomy

Orthornavirae› Duplornaviricota› Chrymotiviricetes› Ghabrivirales› Chrysoviridae› Betachrysovirus› Penicillium_janczewskii_chrysovirus_2

TaxID: 1755793

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 306-437_822-869

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009553287__Alternaria_alternata_chrysovirus_1__2066695__D294-443_597-609

D2 medium residues 44-211

PDB

Domain cluster: rep: VP2__YP_009665170__Eriocheir_sinensis_reovirus__273810__D721-872

CATH (26)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5uivA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.72	66.0	5.99e-01	100.0%	89.3%
1rkbA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.70	61.0	6.07e-01	100.0%	90.2%
4mqbB00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.70	65.0	6.06e-01	99.4%	95.1%
1zp6A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.70	63.0	6.25e-01	99.4%	92.6%
2f6rA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.69	63.0	5.66e-01	100.0%	82.6%
6ln3A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.68	63.0	5.92e-01	100.0%	93.6%
1khtB00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.67	61.0	5.84e-01	97.0%	94.8%
2iyvA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.66	58.0	5.69e-01	99.4%	88.3%
1kjwA02	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.66	44.0	5.05e-01	99.4%	93.4%
1kagA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.65	54.0	5.56e-01	98.8%	93.7%
1texA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.63	58.0	5.12e-01	100.0%	87.4%
2l69A00	3.40.50.11230	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold ›	0.63	44.0	4.91e-01	100.0%	91.0%
2rhmC00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.60	55.0	5.28e-01	99.4%	91.6%
3v9pB00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.60	54.0	5.12e-01	98.8%	95.5%
3fdiB00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.58	53.0	5.18e-01	100.0%	94.4%
1gvnD00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	50.0	4.30e-01	98.2%	65.2%
3wp0A00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.56	51.0	4.99e-01	99.4%	95.0%
4nnaA01	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.56	51.0	4.04e-01	100.0%	97.9%
3bjrA00	3.40.50.1820	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain	0.55	51.0	4.46e-01	98.8%	86.9%
8e9gJ01	1.20.120.1200	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ	0.53	27.0	2.79e-01	99.4%	47.9%
3ztaA00	1.10.490.130	Mainly Alpha › Orthogonal Bundle › Globin-like ›	0.52	37.0	4.02e-01	85.1%	86.3%
3sxuA00	3.40.50.10110	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › DNA polymerase III subunit chi	0.52	38.0	4.12e-01	90.5%	87.7%
4j6fA02	3.40.50.720	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain	0.52	37.0	3.81e-01	92.9%	76.7%
1cqxA01	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.51	36.0	3.86e-01	84.5%	81.3%
1cmwA01	3.40.50.1010	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease	0.51	38.0	4.06e-01	100.0%	86.8%
3oesA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	42.0	4.34e-01	99.4%	93.6%

ECOD (35)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4946728	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.73	68.0	6.28e-01	100.0%	91.9%
5046449	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.73	66.0	6.17e-01	99.4%	92.4%
4314110	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.73	66.0	6.03e-01	99.4%	88.3%
4185559	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.72	66.0	6.04e-01	99.4%	89.5%
4132363	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.72	66.0	6.03e-01	99.4%	85.9%
3377706	2004.1.1.192 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18	0.72	66.0	6.00e-01	99.4%	83.3%
4967102	2004.1.1.79 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin	0.72	66.0	5.88e-01	99.4%	91.5%
2099763	2004.1.1.79 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin	0.72	66.0	5.99e-01	100.0%	89.3%
5040462	2004.1.1.79 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin	0.70	65.0	6.00e-01	100.0%	93.3%
3499873	2004.1.1.192 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18	0.69	64.0	6.03e-01	100.0%	89.5%
4091241	2004.1.1.41 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK	0.69	62.0	6.08e-01	97.0%	95.6%
4475355	2004.1.1.105 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinase-PPPase	0.68	47.0	4.74e-01	100.0%	70.9%
3588701	2004.1.1.50 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin	0.68	61.0	5.97e-01	96.4%	94.4%
5059729	2004.1.1.41 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK	0.67	61.0	5.45e-01	98.2%	94.3%
3688078	2004.1.1.191 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17	0.67	62.0	5.87e-01	100.0%	89.7%
4130856	2004.1.1.60 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI	0.66	59.0	5.55e-01	98.8%	80.0%
3592293	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.64	59.0	5.71e-01	100.0%	92.1%
1779556	3949.1.1.1 ↗	alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT	0.64	58.0	5.14e-01	100.0%	93.9%
3944963	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.63	57.0	5.49e-01	99.4%	87.4%
4529151	3949.1.1.1 ↗	alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT	0.63	57.0	5.15e-01	100.0%	94.8%
4354223	2004.1.1.192 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18	0.63	57.0	5.58e-01	98.8%	93.5%
3662419	2004.1.1.60 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI	0.62	56.0	5.14e-01	98.8%	84.5%
4542132	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.60	49.0	4.87e-01	90.5%	82.3%
3528542	2004.1.1.345 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF4062	0.57	52.0	3.84e-01	100.0%	50.3%
3624403	7570.1.1.4 ↗	a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › PF27239	0.57	45.0	4.60e-01	97.0%	86.7%
3795398	7570.1.1.0 ↗	a/b three-layered sandwiches › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain › MurD-like peptide ligases, peptide-binding domain	0.56	45.0	4.49e-01	97.0%	84.1%
5037295	2007.5.1.8 ↗	a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL_2	0.53	49.0	4.62e-01	100.0%	96.5%
5051874	2006.1.6.15 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58	0.52	48.0	4.40e-01	99.4%	88.1%
3733860	2006.1.1.28 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › APP1_cat	0.52	47.0	3.97e-01	100.0%	70.4%
3854580	2007.9.1.0 ↗	a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain	0.51	47.0	4.39e-01	100.0%	95.2%
5053107	2008.1.1.14 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr	0.51	34.0	3.79e-01	96.4%	86.0%
5077987	2006.1.6.12 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2	0.51	47.0	4.33e-01	100.0%	89.8%
5000765	2006.1.6.15 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › DUF58	0.51	46.0	4.22e-01	99.4%	83.4%
5038459	2004.1.1.85 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ArsA_ATPase	0.50	45.0	3.78e-01	97.6%	96.5%
4467650	2008.1.1.167 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Vsr, DUF559	0.50	35.0	3.84e-01	98.2%	88.1%

D3 medium residues 212-291

PDB

D4 medium residues 444-495

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2itaA01	1.20.5.920	Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › rhodobacter sphaeroides pufx membrane protein	0.63	45.0	4.48e-01	78.8%	80.4%
3l7wA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	42.0	3.42e-01	75.0%	82.9%
4hltA02	2.60.120.10	Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls	0.55	39.0	2.77e-01	76.9%	93.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4600241	3883.1.1.1 ↗	alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf	0.58	48.0	3.39e-01	100.0%	94.8%
5042171	5054.1.1.6 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH	0.56	45.0	3.51e-01	84.6%	41.8%

D5 medium residues 496-532_549-599_874-1000

PDB

D6 medium residues 600-624_667-729

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	35.3	9.10e-09	72.7%	12.3%

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1lkoA01	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.59	48.0	4.08e-01	87.5%	77.9%
5uiyA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.58	47.0	4.45e-01	88.6%	94.4%
1ashA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.58	43.0	3.64e-01	79.5%	100.0%
6kmjA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.58	46.0	4.25e-01	86.4%	98.2%
6opmD01	1.20.120.920	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain	0.57	40.0	2.85e-01	71.6%	56.3%
7powA01	1.20.120.1760	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CDP-alcohol phosphotransferase transmembrane (TM) domain	0.57	40.0	3.13e-01	72.7%	59.1%
3sjrA00	1.10.132.90	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 ›	0.57	47.0	4.13e-01	87.5%	76.2%
3k2jA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.57	46.0	4.16e-01	87.5%	87.6%
2jpnA00	1.20.1280.210	Mainly Alpha › Up-down Bundle › Monooxygenase › Uncharacterised protein UvsW.1	0.57	36.0	3.82e-01	73.9%	72.2%
1ithA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.56	42.0	3.66e-01	80.7%	99.3%
3hmfA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.56	45.0	4.12e-01	87.5%	91.4%
1gs0A01	1.20.142.10	Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › Poly(ADP-ribose) polymerase, regulatory domain	0.56	43.0	3.79e-01	81.8%	86.8%
5n17A01	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.54	42.0	4.07e-01	87.5%	96.2%
2qq6A01	3.30.390.10	Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain	0.53	42.0	3.90e-01	86.4%	83.6%
2yqdA00	1.20.920.10	Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like	0.53	42.0	3.83e-01	87.5%	85.8%
4w8pA02	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.53	39.0	3.50e-01	79.5%	87.7%
4fm3A00	1.20.1270.390	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.53	36.0	3.52e-01	100.0%	65.3%
4by6D02	1.25.40.800	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.53	39.0	2.97e-01	80.7%	35.6%
1sxjD03	1.20.272.10	Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 ›	0.52	40.0	3.96e-01	81.8%	86.8%
2i2xB01	1.10.1240.10	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain	0.51	40.0	3.87e-01	88.6%	76.0%
3l9fA02	6.10.140.1570	Special › Helix non-globular › Helix Hairpins ›	0.50	40.0	4.14e-01	86.4%	90.1%

ECOD (27)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3742259	129.1.1.11 ↗	alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C	0.65	44.0	3.85e-01	70.5%	71.1%
3924758	4967.1.1.0 ↗	alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases	0.62	35.0	3.71e-01	75.0%	60.0%
5080173	304.41.1.1 ↗	a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N	0.61	43.0	3.56e-01	73.9%	98.7%
3484314	633.1.1.0 ↗	alpha bundles › Bromodomain-like › Bromodomain › Bromodomain	0.60	53.0	4.60e-01	98.9%	97.9%
3432510	616.1.1.0 ↗	alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain	0.59	37.0	4.18e-01	79.5%	84.6%
3431349	109.4.1.3446 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_7, TPR_8, TPR_10, TPR_12, SNAP	0.59	41.0	2.48e-01	71.6%	57.4%
4467337	304.41.1.1 ↗	a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N	0.59	41.0	3.51e-01	78.4%	45.7%
3477822	1147.1.1.1 ↗	alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL	0.59	36.0	3.17e-01	85.2%	42.4%
3965957	5086.1.1.84 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND	0.57	36.0	3.84e-01	86.4%	73.3%
3951204	321.1.1.11 ↗	a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › DUF2126	0.57	44.0	3.03e-01	84.1%	85.4%
3969814	5086.1.1.84 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND	0.57	36.0	3.83e-01	86.4%	73.3%
2429105	4992.1.1.0 ↗	extended segments › RelB-like › RelB-like › RelB-like	0.56	35.0	3.78e-01	86.4%	74.3%
4104496	1197.1.1.1 ↗	alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf	0.56	45.0	3.54e-01	88.6%	77.9%
4935828	304.41.1.1 ↗	a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N	0.56	41.0	3.44e-01	80.7%	46.2%
3386973	5086.1.1.84 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND	0.55	34.0	3.47e-01	86.4%	61.1%
3166260	1.1.7.123 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25885	0.55	35.0	3.15e-01	78.4%	43.8%
3695742	109.3.1.315 ↗	alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF27826	0.55	43.0	3.15e-01	84.1%	70.0%
5072892	601.28.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › VPS28 C-terminal domain-like › VPS28 C-terminal domain-like	0.55	41.0	4.08e-01	80.7%	76.8%
3979204	605.2.1.8 ↗	alpha duplicates or obligate multimers › ROP-like › Hypothetical protein D-63 › Hypothetical protein D-63 › Caudo_TAP	0.55	35.0	3.74e-01	83.0%	74.7%
4579957	304.41.1.1 ↗	a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N	0.54	39.0	3.34e-01	76.1%	97.9%
3591764	109.4.1.70 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID	0.53	38.0	3.29e-01	97.7%	46.2%
141918	101.1.2.49 ↗	alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C	0.53	41.0	3.23e-01	80.7%	97.1%
3928288	1021.1.1.0 ↗	a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases	0.53	41.0	3.76e-01	85.2%	82.5%
3265664	4336.1.1.0 ↗	alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like	0.53	38.0	3.80e-01	88.6%	74.4%
4044417	1037.1.1.1 ↗	alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT	0.52	41.0	2.94e-01	85.2%	51.1%
3732399	622.1.1.0 ↗	alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain	0.50	38.0	3.81e-01	80.7%	82.2%
3709588	632.15.1.0 ↗	alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN)	0.50	33.0	3.43e-01	71.6%	72.5%

D7 medium residues 625-666_730-821

PDB

Domain cluster: rep: RNA-dependent_RNA_polymerase__YP_009342440__Wuhan_insect_virus_18__1923722__D388-416_481-565_595-607

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02123.22 best	RdRP_4	55.8	5.60e-15	69.4%	18.5%

D8 medium residues 1001-1119

PDB

Domain cluster: rep: putative_RNA-dependent_RNA_polymerase__YP_009551629__Colletotrichum_fructicola_chrysovirus_1__2304034__D1009-1132