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ORF1b,_partial
Euk-VirDuck_astrovirus_C-NGB
ORF1b,_partial__YP_002728002__Duck_astrovirus_C-NGB__622438
Identity
- Accession:
- YP_002728002 ↗
- Protein ID:
- ORF1b,_partial
- Kingdom:
- euk
Quality
91.7
mean pLDDT
Taxonomy
Orthornavirae›
Pisuviricota›
Stelpaviricetes›
Stellavirales›
Astroviridae›
Avastrovirus›
Duck_astrovirus_C-NGB
TaxID: 622438
Cluster
View cluster (450 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 439-515
D2
medium
residues 34-58_75-96_125-217
Domain cluster:
rep: putative_non-structural_protein_NS5__NP_776035__Tamana_bat_virus__161675__D298-445
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 33.0 | 4.10e-08 | 90.0% | 18.7% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5367 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.83 | 74.0 | 5.28e-01 | 94.3% | 50.8% |
| 2541763 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.80 | 72.0 | 5.12e-01 | 94.3% | 49.9% |
| 1875037 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.79 | 75.0 | 5.29e-01 | 100.0% | 51.2% |
| 1173784 | 304.48.1.8 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1 | 0.78 | 70.0 | 5.03e-01 | 94.3% | 50.7% |
| 1279063 | 304.48.1.13 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Flavi_NS5 | 0.78 | 72.0 | 5.01e-01 | 100.0% | 44.6% |
| None | — | 0.78 | 70.0 | 5.01e-01 | 94.3% | 51.1% | |
| 2994348 | 304.48.1.9 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_1,CoV_RPol_N | 0.76 | 70.0 | 4.20e-01 | 100.0% | 19.8% |
| 5366 | 304.48.1.15 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 | 0.72 | 59.0 | 4.19e-01 | 85.7% | 44.0% |
| 217141 | 304.48.1.15 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RdRP_3 | 0.71 | 63.0 | 4.61e-01 | 94.3% | 43.7% |
D3
medium
residues 97-124_230-274_333-429
Domain cluster:
rep: RNA-dependent_RNA_polymerase__YP_009333212__Beihai_astro-like_virus__1922353__D104-144_202-314
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 69.4 | 3.70e-19 | 57.6% | 20.9% |
D4
medium
residues 218-229_275-332
Domain cluster:
rep: NIb__YP_010088127__Dendrobium_chlorotic_mosaic_virus__2562807__D81-113_256-322
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00680.26 best | RdRP_1 | 30.9 | 1.70e-07 | 84.3% | 11.6% |