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ORF1b

Euk-Vir

Air_potato_virus_1

ORF1b__YP_010085053__Air_potato_virus_1__2491018

Identity

Accession:
YP_010085053 ↗
Protein ID:
ORF1b
Kingdom:
euk

Quality

82.2 mean pLDDT

Taxonomy

Orthornavirae› Kitrinoviricota› Alsuviricetes› Martellivirales› Closteroviridae› Ampelovirus› Air_potato_virus_1

TaxID: 2491018

Cluster

View cluster (450 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-98_392-494
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 38.1 1.20e-09 43.3% 19.1%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x2lA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 22.0 3.24e-01 97.0% 70.6%
1cy5A00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.54 18.0 2.55e-01 90.5% 58.7%
4biuE01 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.53 19.0 2.63e-01 71.6% 60.2%
3zbhA00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.52 19.0 2.74e-01 73.6% 67.8%
2ke4A00 6.10.140.470 Special › Helix non-globular › Helix Hairpins › 0.50 21.0 2.91e-01 72.1% 76.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3283355 150.5.1.51 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100_2 0.55 20.0 3.06e-01 73.6% 76.5%
D2 medium residues 99-221_265-334
PDB
Domain cluster: rep: hypothetical_protein_3__YP_009345007__Wuhan_spider_virus_8__1923757__D1-105_147-200
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 62.9 3.80e-17 65.3% 26.8%
PF00978.27 RdRP_2 62.3 5.70e-17 37.3% 15.7%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1699894 304.48.2.2 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › 'palm' domain in birnaviruse RNA-dependent RNA polymerase › Permu_RdRp_palm 0.74 69.0 4.97e-01 100.0% 54.4%
3258406 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.73 68.0 4.81e-01 100.0% 52.4%
3877925 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.73 68.0 5.36e-01 100.0% 76.4%
3938749 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.73 68.0 5.42e-01 100.0% 78.1%
3772920 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.73 68.0 5.80e-01 100.0% 85.0%
3789227 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.73 68.0 5.73e-01 100.0% 95.5%
3927049 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.72 67.0 5.21e-01 100.0% 73.2%
3939319 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.72 67.0 5.25e-01 100.0% 79.7%
3273928 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.72 67.0 4.70e-01 100.0% 51.9%
3928801 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.72 67.0 5.41e-01 100.0% 83.7%
4524063 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.71 66.0 4.59e-01 100.0% 47.1%
3878013 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.71 66.0 5.16e-01 100.0% 73.5%
3915025 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.71 66.0 4.45e-01 100.0% 42.5%
4188583 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.71 67.0 5.09e-01 100.0% 67.0%
3382764 626.1.1.0 ↗ alpha complex topology › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) › Formin homology 2 domain (FH2 domain) 0.70 64.0 4.30e-01 96.9% 42.0%
3983816 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.70 52.0 4.76e-01 76.2% 85.6%
3451410 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.70 65.0 4.85e-01 100.0% 62.6%
3691350 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.69 65.0 5.74e-01 100.0% 91.5%
3574984 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.68 63.0 5.02e-01 100.0% 75.2%
3923013 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.66 62.0 5.02e-01 100.0% 68.7%
1697857 304.48.1.30 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › CPV_RdRP_pol_dom 0.66 61.0 5.00e-01 100.0% 89.9%
4424453 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.65 60.0 4.31e-01 100.0% 53.1%
4361688 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.64 60.0 4.78e-01 100.0% 73.9%
None — 0.64 54.0 4.34e-01 88.1% 71.8%
3241316 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 58.0 4.79e-01 100.0% 80.0%
3454701 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.61 49.0 4.31e-01 84.5% 80.7%
D3 medium residues 222-264_335-391
PDB
Domain cluster: rep: RNA_dependent_RNA_polymerase,_partial__YP_002364303__Grapevine_leafroll-associated_virus_10__367121__D252-284_355-434
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00978.27 best RdRP_2 56.7 2.90e-15 57.0% 12.3%