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ORF23

Euk-Vir

Bovine_gammaherpesvirus_6

ORF23__YP_009042002__Bovine_gammaherpesvirus_6__1504288

Identity

Accession:
YP_009042002 ↗
Protein ID:
ORF23
Kingdom:
euk

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Bovine_gammaherpesvirus_6

TaxID: 1504288

Cluster

View cluster (15 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-154
PDB
Domain cluster: rep: tegument_protein_UL88__YP_002608280__Human_herpesvirus_5__10359__D21-114_139-191
D2 high residues 203-288
PDB
Domain cluster: rep: tegument_protein_UL88__NP_042619__Equid_gammaherpesvirus_2__12657__D211-282
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04682.18 best Herpes_BTRF1 101.7 6.20e-29 98.8% 29.7%
D3 high residues 308-400
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04682.18 best Herpes_BTRF1 117.9 7.30e-34 100.0% 35.9%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.60 45.0 4.51e-01 80.6% 90.7%
1j09A04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.59 29.0 3.70e-01 75.3% 87.5%
4fqnC00 1.20.1160.20 Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › 0.58 38.0 3.95e-01 94.6% 72.9%
3s63A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.54 41.0 4.24e-01 82.8% 92.0%
1w36F02 1.10.10.160 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.53 37.0 3.67e-01 73.1% 97.0%
4x9tA01 3.40.190.150 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bordetella uptake gene, domain 1 0.52 42.0 3.56e-01 90.3% 75.4%
3ljxA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.52 42.0 3.30e-01 94.6% 78.5%
2af6A02 6.10.140.450 Special › Helix non-globular › Helix Hairpins › 0.51 27.0 3.19e-01 81.7% 74.2%
3veaA01 1.20.1270.380 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › MatP, N-terminal domain 0.51 35.0 3.61e-01 90.3% 74.2%
4f92B10 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.51 43.0 3.79e-01 94.6% 70.6%
1v66A00 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.51 32.0 3.66e-01 81.7% 90.8%
2wadB03 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.50 33.0 3.35e-01 100.0% 68.1%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012860 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.71 37.0 3.68e-01 80.6% 46.0%
3819797 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.62 31.0 3.05e-01 79.6% 41.0%
3736234 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.62 41.0 4.18e-01 82.8% 70.0%
4180320 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.61 30.0 2.41e-01 79.6% 22.2%
3590995 2485.1.1.41 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_4 0.60 46.0 3.76e-01 100.0% 44.1%
4936475 103.4.1.31 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › PF30410 0.60 36.0 4.13e-01 80.6% 84.6%
4067861 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.59 32.0 3.38e-01 80.6% 56.5%
5065873 1075.5.1.0 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter 0.59 40.0 3.06e-01 81.7% 31.7%
3742721 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.57 43.0 4.23e-01 80.6% 85.0%
4149445 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.56 45.0 3.30e-01 86.0% 50.6%
3180704 592.6.1.1 ↗ alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.56 42.0 3.96e-01 80.6% 73.0%
3230930 103.4.1.5 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX_2 0.56 37.0 3.84e-01 79.6% 72.9%
4976087 4156.1.1.0 ↗ alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.56 46.0 4.13e-01 90.3% 74.6%
4990324 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 39.0 3.74e-01 86.0% 63.8%
2084570 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.54 42.0 4.30e-01 87.1% 85.9%
4934727 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 38.0 3.81e-01 76.3% 81.1%
3691510 1128.1.1.0 ↗ alpha bundles › LYR protein › LYR protein › LYR protein 0.52 34.0 3.29e-01 81.7% 58.1%
2141738 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.51 37.0 3.66e-01 76.3% 79.8%
4681348 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.50 35.0 3.43e-01 71.0% 94.0%