←Back to structures

ORF24

Euk-Vir

Bovine_gammaherpesvirus_6

ORF24__YP_009042003__Bovine_gammaherpesvirus_6__1504288

Identity

Accession:
YP_009042003 ↗
Protein ID:
ORF24
Kingdom:
euk

Quality

70.0 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Macavirus› Bovine_gammaherpesvirus_6

TaxID: 1504288

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 224-348
PDB
Domain cluster: rep: ORF16__NP_733869__Callitrichine_gammaherpesvirus_3__106331__D190-345
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03043.21 best Herpes_UL87 90.5 1.40e-25 100.0% 23.5%
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2uvaG03 3.30.70.3320 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 4.22e-01 94.4% 89.8%
3gfhA01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.50 34.0 3.65e-01 70.4% 95.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981606 3627.1.1.0 ↗ alpha bundles › UDP-galactofuranosyl transferase GlfT2 helical domain › UDP-galactofuranosyl transferase GlfT2 helical domain › UDP-galactofuranosyl transferase GlfT2 helical domain 0.51 28.0 2.40e-01 83.2% 33.3%
D2 medium residues 1-22_78-154
PDB
Domain cluster: rep: UL87__YP_009552487__Eptesicus_fuscus_gammaherpesvirus__2035399__D154-228
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qj8A00 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.51 37.0 2.67e-01 75.8% 53.2%
D3 medium residues 23-77_155-216
PDB
Domain cluster: rep: hypothetical_protein__YP_009551834__Rhinolophus_gammaherpesvirus_1__2054179__D30-81_138-219
D4 medium residues 391-422_518-595
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03043.21 best Herpes_UL87 153.2 1.40e-44 71.8% 15.6%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.77 53.0 5.86e-01 70.0% 92.0%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.74 51.0 5.66e-01 70.0% 93.0%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.74 55.0 5.94e-01 77.3% 100.0%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.71 53.0 4.53e-01 78.2% 83.6%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 39.0 3.74e-01 86.4% 53.1%
3fo5B00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 51.0 4.04e-01 90.9% 97.0%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.62 52.0 4.98e-01 90.9% 79.4%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 47.0 3.94e-01 83.6% 88.7%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.61 29.0 3.85e-01 83.6% 84.5%
5ao2B02 3.30.70.2760 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 4.36e-01 70.9% 96.6%
1ad2A01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.55 43.0 4.22e-01 92.7% 76.0%
4oc9A02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 42.0 3.95e-01 85.5% 97.8%
1x31C02 3.30.70.1520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase 0.53 36.0 3.99e-01 87.3% 93.8%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 20.0 3.21e-01 74.5% 100.0%
2g18I00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.52 41.0 3.27e-01 87.3% 76.1%
8dy9I01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 35.0 2.93e-01 70.9% 96.1%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 26.0 2.63e-01 73.6% 42.4%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 39.0 3.68e-01 80.9% 90.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4027650 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.80 55.0 6.17e-01 70.0% 100.0%
5051706 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.77 61.0 6.36e-01 81.8% 100.0%
5027198 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.77 58.0 5.89e-01 79.1% 87.3%
4985176 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.76 54.0 5.42e-01 72.7% 94.5%
4944335 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.76 56.0 6.02e-01 76.4% 100.0%
4936584 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.76 59.0 6.28e-01 80.9% 98.9%
3415773 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.76 50.0 5.56e-01 81.8% 83.3%
3403199 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.75 52.0 5.25e-01 70.9% 74.5%
3167766 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.75 56.0 4.32e-01 78.2% 77.9%
5019170 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.74 54.0 5.37e-01 75.5% 85.2%
5036533 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.74 56.0 4.41e-01 80.0% 66.2%
5005470 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.74 51.0 5.37e-01 71.8% 95.0%
4981525 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.73 51.0 5.87e-01 82.7% 100.0%
4947558 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 52.0 5.62e-01 73.6% 100.0%
5073587 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 49.0 5.25e-01 70.0% 92.6%
3510576 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.72 50.0 5.81e-01 84.5% 98.8%
5014721 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 52.0 5.56e-01 75.5% 100.0%
5051705 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.71 54.0 5.80e-01 89.1% 91.6%
4973622 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 49.0 5.61e-01 86.4% 97.5%
5065496 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 49.0 5.67e-01 86.4% 98.8%
4985658 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.70 51.0 5.74e-01 87.3% 97.6%
5052639 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.70 56.0 4.44e-01 86.4% 99.1%
5054793 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.70 51.0 5.65e-01 90.9% 93.3%
4941554 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.70 52.0 5.50e-01 90.0% 86.0%
4467333 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.70 53.0 5.65e-01 92.7% 91.6%
4968205 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.70 51.0 5.60e-01 90.0% 93.3%
3544235 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.69 52.0 5.64e-01 90.9% 94.4%
4950424 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.69 51.0 5.40e-01 90.0% 85.0%
3510568 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.69 51.0 5.42e-01 89.1% 88.4%
4021508 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.69 52.0 5.41e-01 90.9% 86.0%
3407402 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.69 52.0 5.58e-01 79.1% 94.7%
4966809 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.68 48.0 5.46e-01 77.3% 100.0%
4964235 3435.1.1.0 ↗ a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.67 55.0 4.11e-01 86.4% 78.1%
3710489 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.67 52.0 5.38e-01 92.7% 85.7%
3598831 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 52.0 5.46e-01 92.7% 90.0%
4993386 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 52.0 5.49e-01 81.8% 97.9%
5048326 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 52.0 5.15e-01 81.8% 95.7%
4971751 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.64 53.0 5.17e-01 88.2% 85.8%
4950203 331.4.1.35 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › PF27341 0.63 52.0 4.12e-01 90.0% 99.6%
3503689 331.1.1.1 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.62 53.0 5.39e-01 90.9% 91.8%
3964909 3016.1.1.0 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 49.0 4.47e-01 89.1% 100.0%
4544844 331.1.1.13 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.57 45.0 4.63e-01 84.5% 95.2%
3706852 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 39.0 3.28e-01 70.9% 42.2%
4945268 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.53 37.0 3.33e-01 72.7% 97.5%
4937915 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.53 29.0 3.11e-01 75.5% 59.6%
3928662 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 44.0 3.75e-01 93.6% 78.4%
3407979 11.1.3.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Cu,Zn superoxide dismutase-like › Sod_Cu 0.52 40.0 3.53e-01 84.5% 86.9%
312112 867.1.1.2 ↗ a+b three layers › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Coproporphyrinogen III oxidase › Fe_bilin_red 0.52 41.0 3.24e-01 87.3% 73.0%
4959597 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.51 35.0 3.10e-01 71.8% 88.8%
3967383 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.51 36.0 3.20e-01 72.7% 91.2%
4957641 225.1.1.3 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c 0.50 35.0 3.14e-01 73.6% 92.1%
D5 medium residues 423-517
PDB
D6 medium residues 667-745
PDB