ORF25

Euk-Vir

Macaca_nemestrina_rhadinovirus_2

ORF25__YP_010084567__Macaca_nemestrina_rhadinovirus_2__123630

Identity

74.9 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Macaca_nemestrina_rhadinovirus_2

TaxID: 123630

View cluster (34 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 48-105

PDB

D2 medium residues 106-192

PDB

D3 medium residues 259-337_362-388

PDB

D4 medium residues 462-476_1202-1326

PDB

Domain cluster: rep: major_capsid_protein__NP_065524__Alcelaphine_gammaherpesvirus_1__35252__D1180-1286_1299-1321

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	208.3	2.60e-61	92.9%	9.2%

D5 medium residues 477-568

PDB

Domain cluster: rep: BcLF1__YP_001129493__Human_herpesvirus_4_type_2__12509__D484-559

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	87.2	9.50e-25	100.0%	6.5%

D6 medium residues 721-805_818-829_887-995

PDB

Domain cluster: rep: major_capsid_protein__YP_009051992__Elephant_endotheliotropic_herpesvirus_5__768738__D704-805_870-1011

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF03122.21 best	Herpes_MCP	111.2	5.20e-32	53.9%	8.0%
PF03122.21	Herpes_MCP	35.5	3.80e-09	48.1%	7.7%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
2738095	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.89	85.0	6.20e-01	100.0%	54.9%
2116543	4066.1.1.1 ↗	a+b complex topology › Major capsid protein VP5 › Major capsid protein VP5 › Major capsid protein VP5 › Herpes_MCP	0.78	75.0	5.48e-01	100.0%	53.0%