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ORF26

Euk-Vir

Retroperitoneal_fibromatosis-associated_herpesvirus

ORF26__YP_010084390__Retroperitoneal_fibromatosis-associated_herpesvirus__111469

Identity

Accession:: YP_010084390 ↗
Protein ID:: ORF26
Kingdom:: euk

Quality

83.5 mean pLDDT

Taxonomy

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Rhadinovirus› Retroperitoneal_fibromatosis-associated_herpesvirus

TaxID: 111469

Cluster

View cluster (76 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-112_287-302

PDB

Domain cluster: rep: capsid_triplex_subunit_2__NP_077456__Cercopithecine_alphaherpesvirus_9__35246__D3-114_290-314

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	127.3	1.10e-36	89.4%	35.5%

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3wwvA00	2.40.50.140	Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins	0.60	32.0	4.33e-01	91.1%	100.0%
3qtgA02	2.40.33.10	Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like	0.55	31.0	3.55e-01	83.7%	73.4%
4ac9C04	2.40.10.190	Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4	0.55	29.0	3.58e-01	78.0%	80.0%
3gg8C03	2.40.33.10	Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like	0.53	32.0	3.56e-01	77.2%	76.3%
2wssA01	2.40.30.20	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.52	28.0	3.16e-01	91.1%	67.7%
7r6yA01	2.40.33.10	Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like	0.52	32.0	3.71e-01	81.3%	84.8%

ECOD (27)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4184958	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.63	29.0	3.47e-01	77.2%	64.7%
4943366	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.59	31.0	3.76e-01	95.9%	75.3%
5076995	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.59	31.0	3.80e-01	81.3%	78.8%
4245518	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.59	30.0	3.87e-01	86.2%	82.7%
4230122	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.57	29.0	3.26e-01	76.4%	62.0%
4890345	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.56	31.0	3.75e-01	85.4%	80.0%
3452625	1.1.7.69 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel	0.56	32.0	3.55e-01	77.2%	70.0%
4402716	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.56	30.0	3.55e-01	96.7%	75.3%
3893654	1.1.7.69 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel	0.55	33.0	3.48e-01	77.2%	65.2%
3415428	1.1.7.69 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MOV-10_beta-barrel	0.55	34.0	3.65e-01	76.4%	72.4%
4429352	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.54	33.0	3.77e-01	97.6%	82.2%
4085589	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.54	30.0	3.69e-01	77.2%	85.0%
3397088	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.54	39.0	4.11e-01	76.4%	84.3%
3690254	1.1.7.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C	0.53	33.0	3.86e-01	95.9%	86.7%
4403870	1.1.7.17 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N	0.53	31.0	3.56e-01	97.6%	75.8%
3786521	1.1.7.46 ↗	beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B	0.53	35.0	3.66e-01	96.7%	72.2%
4468653	1.1.15.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK	0.53	31.0	3.54e-01	77.2%	76.8%
4379635	1.1.15.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK	0.52	31.0	3.57e-01	77.2%	77.9%
4251719	1.1.15.0 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like	0.52	31.0	3.55e-01	77.2%	77.9%
3310664	1.1.15.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK	0.52	31.0	3.48e-01	77.2%	76.8%
3966502	1.1.15.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK	0.51	31.0	3.42e-01	83.7%	74.0%
4337888	1.1.15.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK	0.51	30.0	3.36e-01	77.2%	73.0%
4994399	1.1.15.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK	0.51	31.0	3.49e-01	77.2%	77.9%
4951536	1.1.9.23 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473	0.51	32.0	3.56e-01	87.0%	79.0%
4949379	1.1.15.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK	0.51	30.0	3.38e-01	76.4%	74.0%
3481480	1.1.15.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK	0.51	32.0	3.56e-01	77.2%	79.0%
3386080	1.1.15.1 ↗	beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK	0.50	31.0	3.48e-01	77.2%	78.0%

D2 medium residues 214-280

PDB

Domain cluster: rep: capsid_protein__YP_004207862__Cricetid_gammaherpesvirus_2__1605972__D219-292

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF01802.24 best	Herpes_V23	57.2	2.50e-15	100.0%	24.0%