ORF29-DNA_packaging_terminase

Euk-Vir

Eptesicus_fuscus_gammaherpesvirus

ORF29-DNA_packaging_terminase__YP_009552492__Eptesicus_fuscus_gammaherpesvirus__2035399

Identity

65.1 mean pLDDT

Heunggongvirae› Peploviricota› Herviviricetes› Herpesvirales› Orthoherpesviridae› Eptesicus_fuscus_gammaherpesvirus

TaxID: 2035399

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 137-239

PDB

Domain cluster: rep: ORF29A__YP_010084577__Macaca_nemestrina_rhadinovirus_2__123630__D25-83_114-155

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02500.23 best	DNA_pack_N	38.9	1.20e-09	93.2%	33.6%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3p5pA02	1.50.10.160	Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase ›	0.51	40.0	3.28e-01	85.4%	96.0%

D2 high residues 577-791

PDB

Domain cluster: rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00331__D317-603

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02499.23 best	DNA_pack_C	299.6	4.50e-89	100.0%	59.5%

D3 medium residues 240-349_472-494

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02500.23 best	DNA_pack_N	171.8	3.30e-50	89.5%	41.3%

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3vayA02	1.20.120.1600	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) ›	0.55	35.0	4.23e-01	78.9%	98.9%
2vg0A00	3.40.1180.10	Alpha Beta › 3-Layer(aba) Sandwich › Undecaprenyl pyrophosphate synthetase › Decaprenyl diphosphate synthase-like	0.53	43.0	3.65e-01	87.2%	74.9%
5hsgA02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.53	41.0	3.91e-01	82.7%	100.0%
1mkyA03	3.30.300.20	Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain	0.52	31.0	3.71e-01	86.5%	87.8%
1sxjA01	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.51	42.0	3.82e-01	88.0%	95.0%
1q77A00	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.51	40.0	3.98e-01	82.7%	83.3%
6cnzF00	1.20.59.10	Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase	0.51	38.0	3.65e-01	78.9%	67.1%
2jaxA01	3.40.50.620	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs	0.51	38.0	3.94e-01	81.2%	84.0%
4pe5B02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.50	39.0	3.58e-01	81.2%	86.5%
3g85A02	3.40.50.2300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator	0.50	37.0	3.81e-01	77.4%	95.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3957178	2003.2.1.1 ↗	a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin	0.53	37.0	2.93e-01	72.9%	51.4%
3609329	2006.1.4.0 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like	0.52	40.0	3.53e-01	82.7%	63.4%
3634459	327.7.1.1 ↗	a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer	0.50	35.0	3.78e-01	89.5%	85.5%
3943468	7581.1.1.0 ↗	a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like	0.50	39.0	3.05e-01	82.7%	69.3%

D4 medium residues 350-421_442-455

PDB

D5 medium residues 495-556

PDB